View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16222_low_3 (Length: 435)
Name: NF16222_low_3
Description: NF16222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16222_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 37 - 424
Target Start/End: Complemental strand, 4488076 - 4487682
Alignment:
| Q |
37 |
cctcctcgagctttgtcctattttctgtacccnnnnnnnttaaacttgacaaaacttaggtgcactaatgaactattgcctatgtatagtc---atagct |
133 |
Q |
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| T |
4488076 |
cctcctcgagctttgtcctattttctgtacccaaaaaattaaaacttgacaaaacctaggtgcactaatgaactattgcctatgtatagtcgtcatagct |
4487977 |
T |
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| Q |
134 |
aagtagaaggtgagagatcaactattttggaaggatggaagacagacattcgtgggggacccgtgcccacataagacagctgcccaacaaaccacagtca |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487976 |
aagtagaaggtgagagatcaactattttggaaggatggaagacagacattcgtgggggacccgtgcccacataagacagctgcccaacaaaccacagtca |
4487877 |
T |
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| Q |
234 |
tcttcacacaatggccacatcctcatggctccaccc----tcatatccactcccttcctagctttgtatcttcacacactacccgcgtgcctcaccatca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
4487876 |
tcttcacacaatggccacatcctcatggctccaccctcgttcatatccactcccttcctagctttgtatcttcacacactacccgcgcgcctcgccatca |
4487777 |
T |
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| Q |
330 |
acctgtataacgcggggttaggcaacgttggtggtgttggagaaaatcggcatagagaaaataaaaggattcaatcacaacacaaaaatataaca |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
4487776 |
acctgtataacgcggggttaggcaacgttggtggtgttggagaaaatcggcatagagaaaataaaaagactcaatcacaacacaaaaatataaca |
4487682 |
T |
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