View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16222_low_4 (Length: 422)

Name: NF16222_low_4
Description: NF16222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16222_low_4
NF16222_low_4
[»] chr6 (4 HSPs)
chr6 (126-381)||(17589-17846)
chr6 (126-381)||(9828-10085)
chr6 (158-381)||(12554-12778)
chr6 (334-381)||(30641562-30641608)
[»] chr3 (11 HSPs)
chr3 (196-381)||(2544961-2545150)
chr3 (196-309)||(35127173-35127287)
chr3 (196-305)||(36429987-36430097)
chr3 (205-316)||(46278512-46278623)
chr3 (195-309)||(27221384-27221507)
chr3 (321-381)||(46278650-46278709)
chr3 (334-381)||(27221502-27221549)
chr3 (334-381)||(35127131-35127178)
chr3 (205-244)||(9291862-9291901)
chr3 (347-381)||(37921915-37921949)
chr3 (353-381)||(36430092-36430120)
[»] chr1 (5 HSPs)
chr1 (195-381)||(32060440-32060628)
chr1 (196-381)||(35754008-35754206)
chr1 (235-317)||(23552456-23552538)
chr1 (195-305)||(8081885-8081991)
chr1 (353-381)||(8081986-8082014)
[»] chr8 (10 HSPs)
chr8 (196-361)||(30735875-30736043)
chr8 (195-309)||(29668732-29668848)
chr8 (199-309)||(7839993-7840104)
chr8 (196-316)||(11676253-11676374)
chr8 (334-381)||(29668843-29668890)
chr8 (244-316)||(11668019-11668091)
chr8 (321-381)||(11668159-11668218)
chr8 (321-381)||(11676421-11676480)
chr8 (334-381)||(7839952-7839998)
chr8 (334-381)||(990210-990256)
[»] chr4 (8 HSPs)
chr4 (195-309)||(50063730-50063845)
chr4 (196-309)||(28071412-28071526)
chr4 (334-381)||(50063840-50063887)
chr4 (195-247)||(25516846-25516899)
chr4 (195-247)||(25536719-25536772)
chr4 (334-381)||(28071371-28071417)
chr4 (234-291)||(25155102-25155159)
chr4 (353-381)||(2035382-2035410)
[»] chr5 (6 HSPs)
chr5 (195-305)||(2643631-2643742)
chr5 (195-301)||(2315886-2315993)
chr5 (196-314)||(11015984-11016103)
chr5 (126-196)||(43584056-43584126)
chr5 (196-282)||(29836536-29836623)
chr5 (321-361)||(11016126-11016165)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 126 - 381
Target Start/End: Complemental strand, 17846 - 17589
Alignment:
Q  126 tcacctgttgatttagaagaaaa-cggccggcgcgagcagttagacggtggccaaccaagtggacggctgccaaggtttcaaaaaa-ggaccggtaccgg 223  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17846 tcacctgttgatttagaagaaaaacggccggcgcgagcagttagacggtggccaaccaagtggacggctgccaaggtttcaaaaaaaggaccggtaccgg 17747  T
Q  224 gattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaagaatcacaggaaaatcgccgttgaggccg 323  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  17746 gattgcggccgttacaaaacggtatcagcagccaccttgaccgtttttggaccttttcacgccgagaacaaaaatcacaggaaaatcgccgttgcggccg 17647  T
Q  324 ttgcagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17646 ttgcagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 17589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 126 - 381
Target Start/End: Complemental strand, 10085 - 9828
Alignment:
Q  126 tcacctgttgatttagaagaaaa-cggccggcgcgagcagttagacggtggccaaccaagtggacggctgccaaggtttcaaaaaa-ggaccggtaccgg 223  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10085 tcacctgttgatttagaagaaaaacggccggcgcgagcagttagacggtggccaaccaagtggacggctgccaaggtttcaaaaaaaggaccggtaccgg 9986  T
Q  224 gattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaagaatcacaggaaaatcgccgttgaggccg 323  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  9985 gattgcggccgttacaaaacggtatcagcagccacctttaccgtttttggaccttttcacgccgagaacaaaaatcacaggaaaatcgccgttgcggccg 9886  T
Q  324 ttgcagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9885 ttgcagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 9828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 158 - 381
Target Start/End: Complemental strand, 12778 - 12554
Alignment:
Q  158 cgagcagttagacggtggccaaccaagtggacggctgccaaggtttcaaaaaa-ggaccggtaccgggattgcggccgttacaaaacggtatcagcagcc 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12778 cgagcagttagacggtggccaaccaagtggacggctgccaaggtttcaaaaaaaggaccggtaccgggattgcggccgttacaaaacggtatcagcagcc 12679  T
Q  257 accgtgaccgtttttggaccttttcacgccgagaacaagaatcacaggaaaatcgccgttgaggccgttgcagacttgaaaattcagaaattttgaacag 356  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12678 accttgaccgtttttggaccttttcacgccgagaacaaaaatcacaggaaaatcgccgttgcggccgttgcagacttgaaaattcagaaattttgaacag 12579  T
Q  357 gagaaaaggaatcgaatctcatatt 381  Q
    |||||||||||||||||||||||||    
T  12578 gagaaaaggaatcgaatctcatatt 12554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 381
Target Start/End: Complemental strand, 30641608 - 30641562
Alignment:
Q  334 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 381  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  30641608 gaaaattcagaaattt-gaacaggagaaaaggaatcgaatctcatatt 30641562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 6e-78; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 196 - 381
Target Start/End: Original strand, 2544961 - 2545150
Alignment:
Q  196 caaggtttcaaaa-aaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaa 294  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2544961 caaggtttcaaaaaaaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaa 2545060  T
Q  295 gaatcacaggaaaatcgccgtt---gaggccgttgcagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 381  Q
     ||||||||||||||||||| |   ||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2545061 aaatcacaggaaaatcgccgctacggactccgttacagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 2545150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 196 - 309
Target Start/End: Complemental strand, 35127287 - 35127173
Alignment:
Q  196 caaggtttcaaaaaa-ggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaa 294  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35127287 caaggtttcaaaaaaaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaa 35127188  T
Q  295 gaatcacaggaaaat 309  Q
     ||||||||||||||    
T  35127187 aaatcacaggaaaat 35127173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 196 - 305
Target Start/End: Original strand, 36429987 - 36430097
Alignment:
Q  196 caaggtttcaaaa-aaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaa 294  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36429987 caaggtttcaaaaaaaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaa 36430086  T
Q  295 gaatcacagga 305  Q
     ||||||||||    
T  36430087 aaatcacagga 36430097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 205 - 316
Target Start/End: Original strand, 46278512 - 46278623
Alignment:
Q  205 aaaaaaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaagaatcacagg 304  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||    
T  46278512 aaaaacggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaacgtgaccgtttttggaccttttcacgtcgagaacaaaaatcacagg 46278611  T
Q  305 aaaatcgccgtt 316  Q
    ||||||||||||    
T  46278612 aaaatcgccgtt 46278623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 195 - 309
Target Start/End: Original strand, 27221384 - 27221507
Alignment:
Q  195 ccaaggtttcaaaaaa-ggaccggtaccgggat----tgcggccgttacaaaacggtat----cagcagccaccgtgaccgtttttggaccttttcacgc 285  Q
    |||||||||||||||| ||||||||||||||||    |||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||    
T  27221384 ccaaggtttcaaaaaaaggaccggtaccgggatggattgcggccgttacaaaacggtacagtacagcagccaccgtgaccgtttttggaccttttcacgc 27221483  T
Q  286 cgagaacaagaatcacaggaaaat 309  Q
    ||||||||| ||||||||||||||    
T  27221484 cgagaacaaaaatcacaggaaaat 27221507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 321 - 381
Target Start/End: Original strand, 46278650 - 46278709
Alignment:
Q  321 ccgttgcagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 381  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46278650 ccgttacagacttgaaaattcagaaattt-gaacaggagaaaaggaatcgaatctcatatt 46278709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 381
Target Start/End: Original strand, 27221502 - 27221549
Alignment:
Q  334 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27221502 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 27221549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 381
Target Start/End: Complemental strand, 35127178 - 35127131
Alignment:
Q  334 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35127178 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 35127131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 9291862 - 9291901
Alignment:
Q  205 aaaaaaggaccggtaccgggattgcggccgttacaaaacg 244  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  9291862 aaaaacggaccggtaccgggattgcggccgttacaaaacg 9291901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 381
Target Start/End: Complemental strand, 37921949 - 37921915
Alignment:
Q  347 ttttgaacaggagaaaaggaatcgaatctcatatt 381  Q
    |||||||||||||||||||||||||||||||||||    
T  37921949 ttttgaacaggagaaaaggaatcgaatctcatatt 37921915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 381
Target Start/End: Original strand, 36430092 - 36430120
Alignment:
Q  353 acaggagaaaaggaatcgaatctcatatt 381  Q
    |||||||||||||||||||||||||||||    
T  36430092 acaggagaaaaggaatcgaatctcatatt 36430120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 195 - 381
Target Start/End: Complemental strand, 32060628 - 32060440
Alignment:
Q  195 ccaaggtttcaaaaaa-ggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaaca 293  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32060628 ccaaggtttcaaaaaaaggaccggtgccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggatcttttcacgccgagaaca 32060529  T
Q  294 agaatcacaggaaaatcgccgtt---gaggccgttgcagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 381  Q
    | ||||||||| |||||||||||   ||  ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32060528 aaaatcacagg-aaatcgccgttacggactccgttacagacttgaaaattcagaaa-tttgaacaggagaaaaggaatcgaatctcatatt 32060440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 196 - 381
Target Start/End: Original strand, 35754008 - 35754206
Alignment:
Q  196 caaggtttcaaaa-aaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaa 294  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35754008 caaggtttcaaaaaaaggacccgtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaa 35754107  T
Q  295 gaatcacaggaaaatcgccgttg-------------aggccgttgcagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 381  Q
     ||||||||||||||||||||||             | |||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  35754108 aaatcacaggaaaatcgccgttgcggccgttacggaacgccgttacagacttgaaaattcagaaa-tttgaacagaagaaaaggaatcgaatctcatatt 35754206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 23552538 - 23552456
Alignment:
Q  235 ttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaagaatcacaggaaaatcgccgttg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||    
T  23552538 ttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcaagccgagaacaaaaatcacaggaaaatccccgttg 23552456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 195 - 305
Target Start/End: Original strand, 8081885 - 8081991
Alignment:
Q  195 ccaaggtttcaaaaaa--ggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaac 292  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||||||||||      |||||||||||| |||||||||||||||||| |||||||||    
T  8081885 ccaaggtttcaaaaaaaaggaccggtaccgggattacggccgttacaaaacgg------cagccaccgtgagcgtttttggaccttttcatgccgagaac 8081978  T
Q  293 aagaatcacagga 305  Q
    || ||||||||||    
T  8081979 aaaaatcacagga 8081991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 381
Target Start/End: Original strand, 8081986 - 8082014
Alignment:
Q  353 acaggagaaaaggaatcgaatctcatatt 381  Q
    |||||||||||||||||||||||||||||    
T  8081986 acaggagaaaaggaatcgaatctcatatt 8082014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 196 - 361
Target Start/End: Complemental strand, 30736043 - 30735875
Alignment:
Q  196 caaggtttcaaaaaa-ggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaa 294  Q
    ||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30736043 caaggtttcaaaaaacggaccggtgccgggattgaggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgtcgagaacaa 30735944  T
Q  295 gaatcacaggaaaatcgccgtt---gaggccgttgcagacttgaaaattcagaaattttgaacaggagaa 361  Q
     |||||||||||||||| || |   ||  | ||| |||||||||||||||||||| ||||||||||||||    
T  30735943 aaatcacaggaaaatcgacggtacggactcagttacagacttgaaaattcagaaa-tttgaacaggagaa 30735875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 195 - 309
Target Start/End: Original strand, 29668732 - 29668848
Alignment:
Q  195 ccaaggtttcaaaaa--aggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaac 292  Q
    |||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29668732 ccaaggtttcaaaaataaggaccggtaccgggattgtggccgttacaaaacggtatcagcagccaccgtgaccgtttttcgaccttttcacgccgagaac 29668831  T
Q  293 aagaatcacaggaaaat 309  Q
    || ||||||||||||||    
T  29668832 aaaaatcacaggaaaat 29668848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 199 - 309
Target Start/End: Complemental strand, 7840104 - 7839993
Alignment:
Q  199 ggtttcaaaaaa-ggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaagaa 297  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||    
T  7840104 ggtttcaaaaaacggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcaggtcgagaacaaaaa 7840005  T
Q  298 tcacaggaaaat 309  Q
    ||||||||||||    
T  7840004 tcacaggaaaat 7839993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 196 - 316
Target Start/End: Original strand, 11676253 - 11676374
Alignment:
Q  196 caaggtttcaaaaaag-gaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaa 294  Q
    |||||||||||||||  |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||  ||||||||    
T  11676253 caaggtttcaaaaaacagaccggtaccgggattgcggccgttacaaatcggtatcggcagccaccgtgaccgtttttggtccttttcacgttgagaacaa 11676352  T
Q  295 gaatcacaggaaaatcgccgtt 316  Q
     |||||||| ||||||||||||    
T  11676353 aaatcacagcaaaatcgccgtt 11676374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 381
Target Start/End: Original strand, 29668843 - 29668890
Alignment:
Q  334 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29668843 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 29668890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 316
Target Start/End: Original strand, 11668019 - 11668091
Alignment:
Q  244 ggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaagaatcacaggaaaatcgccgtt 316  Q
    |||||| ||||||||||||||||||||||| ||||||||||  |||||||| || ||||| ||||||||||||    
T  11668019 ggtatcggcagccaccgtgaccgtttttggtccttttcacgttgagaacaaaaaccacagcaaaatcgccgtt 11668091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 321 - 381
Target Start/End: Original strand, 11668159 - 11668218
Alignment:
Q  321 ccgttgcagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 381  Q
    ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  11668159 ccgttacagacttgaaaattcagtaattt-gaacaggagaaaaggaatcgaatctcatatt 11668218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 321 - 381
Target Start/End: Original strand, 11676421 - 11676480
Alignment:
Q  321 ccgttgcagacttgaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 381  Q
    ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  11676421 ccgttacagacttgaaaattcagtaattt-gaacaggagaaaaggaatcgaatctcatatt 11676480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 381
Target Start/End: Complemental strand, 7839998 - 7839952
Alignment:
Q  334 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 381  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||    
T  7839998 gaaaattcagaaattt-gaacaggagaaaaggaaacgaatctcatatt 7839952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 381
Target Start/End: Complemental strand, 990256 - 990210
Alignment:
Q  334 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 381  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  990256 gaaaattcataaatttt-aacaggagaaaagaaatcgaatctcatatt 990210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 195 - 309
Target Start/End: Original strand, 50063730 - 50063845
Alignment:
Q  195 ccaaggtttcaaaa-aaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaaca 293  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  50063730 ccaaggtttcaaaaaaaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtcaccgtttttggaccttttcacgccgagaaca 50063829  T
Q  294 agaatcacaggaaaat 309  Q
    | ||||||||||||||    
T  50063830 aaaatcacaggaaaat 50063845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 196 - 309
Target Start/End: Complemental strand, 28071526 - 28071412
Alignment:
Q  196 caaggtttcaaaaaa-ggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaa 294  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28071526 caaggtttcaaaaaacggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgtcgagaacaa 28071427  T
Q  295 gaatcacaggaaaat 309  Q
     ||||||||||||||    
T  28071426 aaatcacaggaaaat 28071412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 381
Target Start/End: Original strand, 50063840 - 50063887
Alignment:
Q  334 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50063840 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 50063887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 25516899 - 25516846
Alignment:
Q  195 ccaaggtttc-aaaaaaggaccggtaccgggattgcggccgttacaaaacggta 247  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25516899 ccaaggtttcgaaaaaaggaccggtaccgggattgcggccgttacaaaacggta 25516846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 25536719 - 25536772
Alignment:
Q  195 ccaaggtttcaaaa-aaggaccggtaccgggattgcggccgttacaaaacggta 247  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25536719 ccaaggtttcaaaaaaaggaccggtaccgggattgcggccgttacaaaacggta 25536772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 381
Target Start/End: Complemental strand, 28071417 - 28071371
Alignment:
Q  334 gaaaattcagaaattttgaacaggagaaaaggaatcgaatctcatatt 381  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  28071417 gaaaattcagaaattt-gaacaggagaaaaggaatcgaatctcatatt 28071371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 25155102 - 25155159
Alignment:
Q  234 gttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaa 291  Q
    |||||||||||||| | |||||||| || |||||||||| |||||||||||| |||||    
T  25155102 gttacaaaacggtaacggcagccactgttaccgtttttgtaccttttcacgctgagaa 25155159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 381
Target Start/End: Complemental strand, 2035410 - 2035382
Alignment:
Q  353 acaggagaaaaggaatcgaatctcatatt 381  Q
    |||||||||||||||||||||||||||||    
T  2035410 acaggagaaaaggaatcgaatctcatatt 2035382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 195 - 305
Target Start/End: Complemental strand, 2643742 - 2643631
Alignment:
Q  195 ccaaggtttcaaaaaa-ggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaaca 293  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2643742 ccaaggtttcaaaaaaaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttgtaccttttcacgccgagaaca 2643643  T
Q  294 agaatcacagga 305  Q
    | ||||||||||    
T  2643642 aaaatcacagga 2643631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 195 - 301
Target Start/End: Complemental strand, 2315993 - 2315886
Alignment:
Q  195 ccaaggtttcaaaaa-aggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaaca 293  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2315993 ccaaggtttcaaaaacaggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgatcgtttttggaccttttcacgccgagaaca 2315894  T
Q  294 agaatcac 301  Q
    | ||||||    
T  2315893 aaaatcac 2315886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 11015984 - 11016103
Alignment:
Q  196 caaggtttcaaaaaa-ggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttcacgccgagaacaa 294  Q
    ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  11015984 caaggtttcaaaaaacggaccggtaccggaattgcggacgttacaaaacggtatcagcggccaccgtgaccgtttttggaccttttcacgtcgagaacaa 11016083  T
Q  295 gaatcacaggaaaatcgccg 314  Q
     |||||||||||||||||||    
T  11016084 aaatcacaggaaaatcgccg 11016103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 43584126 - 43584056
Alignment:
Q  126 tcacctgttgatttagaagaaaacggccggcgcgagcagttagacggtggccaaccaagtggacggctgcc 196  Q
    |||||| |||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  43584126 tcacctcttgagttagaagaatacggtcggcgcgagcagttagacggtggccaaccaagtggacggttgcc 43584056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 282
Target Start/End: Original strand, 29836536 - 29836623
Alignment:
Q  196 caaggtttcaaaaaa-ggaccggtaccgggattgcggccgttacaaaacggtatcagcagccaccgtgaccgtttttggaccttttca 282  Q
    |||||||| |||||| ||||  ||||||||||| ||| |||||||||| |||||  ||||| ||||| |||||||||| |||||||||    
T  29836536 caaggttttaaaaaacggacatgtaccgggatttcggacgttacaaaatggtataggcagctaccgttaccgtttttgcaccttttca 29836623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 361
Target Start/End: Original strand, 11016126 - 11016165
Alignment:
Q  321 ccgttgcagacttgaaaattcagaaattttgaacaggagaa 361  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  11016126 ccgttacagacttgaaaattcagaaa-tttgaacaggagaa 11016165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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