View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16222_low_7 (Length: 310)
Name: NF16222_low_7
Description: NF16222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16222_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 48587080 - 48587374
Alignment:
| Q |
1 |
tgcagtttcatggtcagtgtatggaggtggtggtggaagtgcttgaacaacatttacatcaatatcaaggggttgagtatttgttgttgcatagaaagga |
100 |
Q |
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| T |
48587080 |
tgcagtttcatggtcagtgtatggaggtggtggtggaagtgcttgaacaacatttacatcaatatcaaggggttgagtatttgttgttgcatagaaagga |
48587179 |
T |
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| Q |
101 |
tggtgaggctgaggcagcatggaattggcaggagtatatccatttgagtagtattgatgaggagggaagtaaccttgagga------------ggctgtg |
188 |
Q |
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| T |
48587180 |
tggtgaggctgaggcagcatggaattggcaggagtatatccatttgagtagtattgatgaggagggaagtaaccttgaggaggctgtggctgtggctgtg |
48587279 |
T |
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| Q |
189 |
gctgtggcatcaaaggctgaggctgagaagagtaataatagtaaggaggtggtggatagtgttcatggtaactattatgtcttcttctacctatg |
283 |
Q |
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| T |
48587280 |
gctgtggcatcaaaggctgaggctgagaagagtaataatagtaaggaggtggtggatagtgttcatggtaactattatgtcttcttctacttatg |
48587374 |
T |
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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 25600962 - 25600887
Alignment:
| Q |
172 |
accttgaggaggctgtggctgtggcatcaaaggctgaggctgagaagagtaataatagtaaggaggtggtggatag |
247 |
Q |
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|||||||||||| ||||| |||||||||| | |||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
25600962 |
accttgaggaggatgtggttgtggcatcagaaactgaggttgagaagagtaataatagtaagggggtggtggatag |
25600887 |
T |
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