View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16222_low_9 (Length: 254)
Name: NF16222_low_9
Description: NF16222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16222_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 15541060 - 15541289
Alignment:
| Q |
11 |
attgatgttcctatttttagtacacacaaaatattgttgttcaagtgttttccgttttgtcctattttaataatttatttttgtggtattaataataatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15541060 |
attgatgttcctatttttagtacacacaaaatattgttgttcaagtgttttccgttttgtcctattttaataatttatttttgtggtattaataataatt |
15541159 |
T |
|
| Q |
111 |
agctacctaaat-aaataattgtaagcaaaacatttgtaat----atttaatgtagtttaaataacttcagtaannnnnnngttgatgttctgggttcga |
205 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||| ||||| ||||| || |
|
|
| T |
15541160 |
agctacctaaatgaattaattgtaagcaaaacatttgtaatattaatttaaagtagtttaaataacttcagtaattttgttgttggtgttcggggtttga |
15541259 |
T |
|
| Q |
206 |
attccggaccttgcatatatcatgcgttgt |
235 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |
|
|
| T |
15541260 |
attccggaccttgcatatatcatgtgttgt |
15541289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University