View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16223_high_15 (Length: 276)
Name: NF16223_high_15
Description: NF16223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16223_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 43 - 266
Target Start/End: Original strand, 44887283 - 44887506
Alignment:
| Q |
43 |
gtcttattaacgaacagaagatcgttggttgtgtgtgtaccatccttgacacgacagaaattaaggaaataagaatttcatctattaccgagttttgaat |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44887283 |
gtcttattaacgaacagaagatcgttggttgtgtgtgtaccatccttgacacgacagaaattaaggaaataagaatttcatctattaccgagttttgaat |
44887382 |
T |
|
| Q |
143 |
cccacaaaattaaatcccaataattcatcgaaagtacatgagttgtttatgcagttctctggtgtacaatgcctgcattactggtgtgttattacatatt |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44887383 |
cccacaaaattaaatcccaataattcatcgaaagtacatgagttgtttatgcagttctctggtgtacaatgcctgcattactggtgtattattacatatt |
44887482 |
T |
|
| Q |
243 |
ttacgaaatccatttgtgcctatg |
266 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
44887483 |
ttacgaaatacatttgtgcctatg |
44887506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44887236 - 44887268
Alignment:
| Q |
1 |
gatcatgcccacaacaactgtcgctatttgtgc |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
44887236 |
gatcatgcccacaacaactgtcgctatttgtgc |
44887268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 28556478 - 28556417
Alignment:
| Q |
112 |
taagaatttcatctattaccgagttttgaatcccacaaaattaaatcccaataattcatcga |
173 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
28556478 |
taagaattccatctattacggaggtttgagtcccacaaaattaaatcccaataagtcatcga |
28556417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University