View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16223_high_18 (Length: 228)

Name: NF16223_high_18
Description: NF16223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16223_high_18
NF16223_high_18
[»] chr2 (4 HSPs)
chr2 (1-228)||(6865860-6866087)
chr2 (99-172)||(6429128-6429201)
chr2 (105-168)||(41585627-41585689)
chr2 (104-164)||(8503968-8504027)
[»] chr1 (8 HSPs)
chr1 (107-178)||(5274925-5274996)
chr1 (99-183)||(52135547-52135630)
chr1 (99-178)||(50519612-50519690)
chr1 (100-170)||(40580804-40580873)
chr1 (102-168)||(42230791-42230857)
chr1 (122-174)||(24604811-24604863)
chr1 (102-166)||(41804709-41804772)
chr1 (124-172)||(44572111-44572158)
[»] chr6 (2 HSPs)
chr6 (118-170)||(1797652-1797704)
chr6 (140-172)||(1113981-1114013)
[»] chr8 (4 HSPs)
chr8 (99-155)||(10501981-10502037)
chr8 (108-168)||(13144660-13144719)
chr8 (123-168)||(9982727-9982772)
chr8 (108-168)||(34388584-34388643)
[»] chr3 (3 HSPs)
chr3 (103-183)||(32665956-32666036)
chr3 (90-129)||(21417665-21417704)
chr3 (107-166)||(49954366-49954425)
[»] chr4 (10 HSPs)
chr4 (99-172)||(24935097-24935170)
chr4 (105-171)||(180064-180130)
chr4 (99-172)||(28151023-28151096)
chr4 (102-168)||(41139544-41139609)
chr4 (102-168)||(42776708-42776773)
chr4 (102-164)||(52294986-52295047)
chr4 (102-168)||(53760727-53760792)
chr4 (140-172)||(8113920-8113952)
chr4 (108-168)||(16516248-16516308)
chr4 (102-178)||(56339204-56339279)
[»] chr7 (6 HSPs)
chr7 (108-168)||(34660351-34660411)
chr7 (102-168)||(45967018-45967083)
chr7 (99-166)||(24580577-24580645)
chr7 (102-143)||(34256342-34256383)
chr7 (108-168)||(30080724-30080783)
chr7 (102-166)||(32650644-32650707)
[»] chr5 (6 HSPs)
chr5 (99-173)||(23196316-23196390)
chr5 (107-168)||(35111302-35111362)
chr5 (102-168)||(10314720-10314785)
chr5 (108-168)||(9894256-9894315)
chr5 (102-166)||(14834895-14834958)
chr5 (108-168)||(17492582-17492641)
[»] scaffold0417 (1 HSPs)
scaffold0417 (123-178)||(11882-11938)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 6866087 - 6865860
Alignment:
Q  1 attgtgtgtatgttggatattatggtgatccttgtcgaaatcacactgagctaccgtaagtttgcaaacgccacattttgtaaatgaattttttcgacgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  6866087 attgtgtgtatgttggatattatggtgatccttgtcgaaatcacactgagctaccgtaagtttgcaaacgccacattttgtaaacgaattttttcgactt 6865988  T
Q  101 aaattttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgtcaaagataaagtttgtccttattattatttca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6865987 aaattttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgtcaaagataaagtttgtccttactattatttca 6865888  T
Q  201 acttatgcaatttgattcttatatgttc 228  Q
    | |||||||| |||||||||||||||||    
T  6865887 aattatgcaaattgattcttatatgttc 6865860  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 6429201 - 6429128
Alignment:
Q  99 gtaaattttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgtcaaa 172  Q
    |||||||| |||||||| ||||||||||| ||||| ||| |||||||||  |||||||  ||||||||||||||    
T  6429201 gtaaatttcattgtttgaatgataaattttaagaattttcaaaatgaaggaattttatcgagtattttgtcaaa 6429128  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 41585689 - 41585627
Alignment:
Q  105 tttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgt 168  Q
    |||||||||||||| |||| ||||||||| ||||||||||| |  | |||||||||||||||||    
T  41585689 tttattgtttggataataa-tttgaagaatttttaaaatgatggaaatttatgaagtattttgt 41585627  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 8504027 - 8503968
Alignment:
Q  104 ttttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtatt 164  Q
    ||||||||||| ||||||||||||| || | ||||||||||||   |||||||||||||||    
T  8504027 ttttattgttttgatgataaatttgtag-atttttaaaatgaatgaattttatgaagtatt 8503968  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 5274925 - 5274996
Alignment:
Q  107 tattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgtcaaagataaa 178  Q
    ||||| ||||||||||||||||||||| |||||| || ||||||||||||||| ||||||||||||| ||||    
T  5274925 tattgcttggatgataaatttgaagaaattttaatataaagagattttatgaattattttgtcaaagctaaa 5274996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 52135630 - 52135547
Alignment:
Q  99 gtaaattttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgtcaaagataaagtttg 183  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||| |  | |||||||||||||||||  ||| |||||||||    
T  52135630 gtaaattttattgtttggatgataa-tttgaagaatttttaaaatgatggaaatttatgaagtattttgttcaagttaaagtttg 52135547  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 50519612 - 50519690
Alignment:
Q  99 gtaaattttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgtcaaagataaa 178  Q
    |||||||||||||||||||| ||||||||  |||| ||||||| ||||  || || || ||||||||||| |||||||||    
T  50519612 gtaaattttattgtttggatcataaattttgagaatttttaaattgaatgga-ttcataaagtattttgttaaagataaa 50519690  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 40580804 - 40580873
Alignment:
Q  100 taaattttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgtca 170  Q
    ||||||||||||||| ||||||||| || ||||| ||| |||||||||| ||||||| || || |||||||    
T  40580804 taaattttattgtttcgatgataaa-ttaaagaattttaaaaatgaagatattttataaaataatttgtca 40580873  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 42230791 - 42230857
Alignment:
Q  102 aattttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgt 168  Q
    ||||| ||||||||||| |||| ||||||||| ||||||||||| |  | |||||||||||| ||||    
T  42230791 aatttcattgtttggataataattttgaagaatttttaaaatgatggaaatttatgaagtatcttgt 42230857  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 24604863 - 24604811
Alignment:
Q  122 aaatttgaagaacttttaaaatgaagagattttatgaagtattttgtcaaaga 174  Q
    ||||| |||||| |||||||| || || ||||||||||||||||||| |||||    
T  24604863 aaattggaagaatttttaaaacgatgatattttatgaagtattttgttaaaga 24604811  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 41804709 - 41804772
Alignment:
Q  102 aattttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtatttt 166  Q
    |||||||||||||||||||| |||||| |||| |||||||||||    ||| |||||||||||||    
T  41804709 aattttattgtttggatgattaatttg-agaatttttaaaatgatagtattgtatgaagtatttt 41804772  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 44572158 - 44572111
Alignment:
Q  124 atttgaagaacttttaaaatgaagagattttatgaagtattttgtcaaa 172  Q
    |||||||||| ||||||||||||| ||||||||||| | ||||||||||    
T  44572158 atttgaagaatttttaaaatgaag-gattttatgaaatgttttgtcaaa 44572111  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 1797704 - 1797652
Alignment:
Q  118 tgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgtca 170  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  1797704 tgataaatttcaagaatttttaaaatgaagagattttatgaagtattttgtca 1797652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 1114013 - 1113981
Alignment:
Q  140 aaatgaagagattttatgaagtattttgtcaaa 172  Q
    ||||||| |||||||||||||||||||||||||    
T  1114013 aaatgaatagattttatgaagtattttgtcaaa 1113981  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 10502037 - 10501981
Alignment:
Q  99 gtaaattttattgtttggatgataaatttgaagaacttttaaaatgaagagatttta 155  Q
    ||||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||    
T  10502037 gtaaattctattgtttggatgataaatttgatgaaatttcaaaatgaagagatttta 10501981  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 13144660 - 13144719
Alignment:
Q  108 attgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgt 168  Q
    ||||||||||| |||| ||||||||| ||| ||||||| |||| |||||||||||||||||    
T  13144660 attgtttggataataa-tttgaagaattttcaaaatgatgagaatttatgaagtattttgt 13144719  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 9982727 - 9982772
Alignment:
Q  123 aatttgaagaacttttaaaatgaagagattttatgaagtattttgt 168  Q
    ||||||||||| ||||||||||| || | |||||||||||||||||    
T  9982727 aatttgaagaatttttaaaatgatgaaaatttatgaagtattttgt 9982772  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 34388584 - 34388643
Alignment:
Q  108 attgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgt 168  Q
    ||||||||||| |||| ||| ||||||||||||||||| |  | |||||||||||||||||    
T  34388584 attgtttggataataa-tttaaagaacttttaaaatgatggaaatttatgaagtattttgt 34388643  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 32665956 - 32666036
Alignment:
Q  103 attttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgtcaaagataaagtttg 183  Q
    |||| |||| ||||||||| ||||||||||| ||||||||||  || | |||||||||||||||||||||| |||| ||||    
T  32665956 atttcattgcttggatgattaatttgaagaatttttaaaatgctgaaaatttatgaagtattttgtcaaagttaaattttg 32666036  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 21417704 - 21417665
Alignment:
Q  90 tttttcgacgtaaattttattgtttggatgataaatttga 129  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  21417704 tttttcgacgtaaatttaattgtttgaatgataaatttga 21417665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 49954425 - 49954366
Alignment:
Q  107 tattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtatttt 166  Q
    |||| |||||||||| ||||||||||| |||||||||||  | | |||||||||||||||    
T  49954425 tattatttggatgattaatttgaagaaattttaaaatgacaaaaatttatgaagtatttt 49954366  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 24935170 - 24935097
Alignment:
Q  99 gtaaattttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgtcaaa 172  Q
    ||||||||  |||||||||| |||||||||||  | ||| |||| ||||||||||||||||||||||| |||||    
T  24935170 gtaaatttcgttgtttggatcataaatttgaaatattttcaaaaagaagagattttatgaagtattttatcaaa 24935097  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 180130 - 180064
Alignment:
Q  105 tttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgtcaa 171  Q
    |||||||||||||||||||||||| |||| ||| ||||| ||  | |||| ||||||||||||||||    
T  180130 tttattgtttggatgataaatttggagaattttcaaaataaaaggtttttgtgaagtattttgtcaa 180064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 28151023 - 28151096
Alignment:
Q  99 gtaaattttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgtcaaa 172  Q
    |||||||| |||||||| |||||||||||  | || |||||||||||||  |||  ||||||||||||||||||    
T  28151023 gtaaatttcattgtttgaatgataaatttcgataaattttaaaatgaaggaattaaatgaagtattttgtcaaa 28151096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 41139544 - 41139609
Alignment:
Q  102 aattttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgt 168  Q
    |||| |||||||||||| |||| ||| ||||| ||||||||||| || | |||||||||||||||||    
T  41139544 aattctattgtttggataataa-tttaaagaatttttaaaatgatgaaaatttatgaagtattttgt 41139609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 42776708 - 42776773
Alignment:
Q  102 aattttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgt 168  Q
    ||||| |||||||||||||||| ||||||||| ||| ||||||| |  | |||||||||||||||||    
T  42776708 aatttcattgtttggatgataa-tttgaagaattttcaaaatgatggaaatttatgaagtattttgt 42776773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 52295047 - 52294986
Alignment:
Q  102 aattttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtatt 164  Q
    ||||| ||||||||||| |||| ||||||||| ||| ||||||| |||| |||||||||||||    
T  52295047 aatttcattgtttggataataa-tttgaagaattttcaaaatgatgagaatttatgaagtatt 52294986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 53760792 - 53760727
Alignment:
Q  102 aattttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgt 168  Q
    |||| |||||||||||| |||| ||||||||| ||||||||||| |  | |||||||||||||||||    
T  53760792 aattctattgtttggataataa-tttgaagaatttttaaaatgatggaaatttatgaagtattttgt 53760727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 8113952 - 8113920
Alignment:
Q  140 aaatgaagagattttatgaagtattttgtcaaa 172  Q
    ||||||| |||||||||||||||||||||||||    
T  8113952 aaatgaatagattttatgaagtattttgtcaaa 8113920  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 16516248 - 16516308
Alignment:
Q  108 attgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgt 168  Q
    ||||||||||| |  ||||||||||| ||| ||||||| || | |||||||||||||||||    
T  16516248 attgtttggattaagaatttgaagaattttcaaaatgatgaaaatttatgaagtattttgt 16516308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 56339204 - 56339279
Alignment:
Q  102 aattttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgtcaaagataaa 178  Q
    ||||| ||||||||||| |||| ||||||||| ||| ||||||| |  | |||||||||||||||||| ||| ||||    
T  56339204 aatttcattgtttggataataa-tttgaagaattttcaaaatgatggaaatttatgaagtattttgtccaagttaaa 56339279  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 34660411 - 34660351
Alignment:
Q  108 attgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgt 168  Q
    |||||||| |||||||||||| |||| ||||||||||||  | ||||||||||||||||||    
T  34660411 attgtttgaatgataaatttggagaatttttaaaatgaaagggttttatgaagtattttgt 34660351  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 45967018 - 45967083
Alignment:
Q  102 aattttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgt 168  Q
    |||||||||||||||||||||| |||| |||| ||||||||||| || | |||||||| ||||||||    
T  45967018 aattttattgtttggatgataattttg-agaatttttaaaatgatgaaaatttatgaaatattttgt 45967083  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 24580577 - 24580645
Alignment:
Q  99 gtaaattttattgtttggatgataaatttgaagaacttttaaa-atgaagagattttatgaagtatttt 166  Q
    |||||||||| |||||||||||||| ||| ||||| ||||||| || || | |||||||||||||||||    
T  24580577 gtaaattttactgtttggatgataattttaaagaatttttaaagataaataaattttatgaagtatttt 24580645  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 34256342 - 34256383
Alignment:
Q  102 aattttattgtttggatgataaatttgaagaacttttaaaat 143  Q
    |||||||||||||||||||| ||||| ||||| |||||||||    
T  34256342 aattttattgtttggatgattaatttaaagaatttttaaaat 34256383  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 30080783 - 30080724
Alignment:
Q  108 attgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgt 168  Q
    |||||||||||||||| ||||||||| ||| ||||||| |  | |||||||||||||||||    
T  30080783 attgtttggatgataa-tttgaagaattttcaaaatgatggaaatttatgaagtattttgt 30080724  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 32650644 - 32650707
Alignment:
Q  102 aattttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtatttt 166  Q
    ||||||||||||||||| |||| ||||||||| ||| ||||||| |  | |||||||||||||||    
T  32650644 aattttattgtttggataataa-tttgaagaattttcaaaatgatggaaatttatgaagtatttt 32650707  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 23196316 - 23196390
Alignment:
Q  99 gtaaattttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgtcaaag 173  Q
    ||||||||||||||||| | |||||||| | ||||  ||||||| ||||| ||||||| ||||||||| ||||||    
T  23196316 gtaaattttattgtttgaaggataaattgggagaatatttaaaaagaagatattttataaagtattttttcaaag 23196390  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 35111302 - 35111362
Alignment:
Q  107 tattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgt 168  Q
    |||||||||||| |||| ||||||||||||| ||||||| || | |||||||||||||||||    
T  35111302 tattgtttggataataa-tttgaagaactttcaaaatgatgaaaatttatgaagtattttgt 35111362  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 10314720 - 10314785
Alignment:
Q  102 aattttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgt 168  Q
    |||| |||||||||||| |||| ||||||||| ||| ||||||| || | |||||||||||||||||    
T  10314720 aattctattgtttggataataa-tttgaagaattttcaaaatgatgaaaatttatgaagtattttgt 10314785  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 9894315 - 9894256
Alignment:
Q  108 attgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgt 168  Q
    ||||||||||| |||| ||||||||| ||| ||||||| | || |||||||||||||||||    
T  9894315 attgtttggataataa-tttgaagaattttcaaaatgatgggaatttatgaagtattttgt 9894256  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 14834895 - 14834958
Alignment:
Q  102 aattttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtatttt 166  Q
    ||||| ||||||||||| |||| ||||||||| ||| ||||||| || | |||||||||||||||    
T  14834895 aatttcattgtttggataataa-tttgaagaattttcaaaatgatgaaaatttatgaagtatttt 14834958  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 17492641 - 17492582
Alignment:
Q  108 attgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgt 168  Q
    |||||||||||||||| ||||||||| ||| ||||||| || | |||| ||||||||||||    
T  17492641 attgtttggatgataa-tttgaagaattttcaaaatgatgaaaatttaagaagtattttgt 17492582  T

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Target: scaffold0417 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 11938 - 11882
Alignment:
Q  123 aatttgaagaacttttaaaatgaagagattttatgaagtattttg-tcaaagataaa 178  Q
    ||||||| ||| ||||||||||| || | |||||||||||||||| |||||||||||    
T  11938 aatttgatgaaattttaaaatgatgaaaatttatgaagtattttgttcaaagataaa 11882  T

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