View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16223_high_7 (Length: 330)

Name: NF16223_high_7
Description: NF16223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16223_high_7
NF16223_high_7
[»] chr7 (2 HSPs)
chr7 (144-310)||(8692798-8692964)
chr7 (1-130)||(8692193-8692322)
[»] chr3 (36 HSPs)
chr3 (10-130)||(28137145-28137265)
chr3 (9-130)||(28479061-28479182)
chr3 (11-130)||(26138411-26138530)
chr3 (248-307)||(28149117-28149176)
chr3 (14-121)||(28508201-28508308)
chr3 (11-121)||(26231835-26231945)
chr3 (239-307)||(28184984-28185052)
chr3 (239-307)||(28054593-28054661)
chr3 (239-307)||(28065018-28065086)
chr3 (239-307)||(28161142-28161210)
chr3 (251-307)||(28480584-28480640)
chr3 (251-307)||(28509767-28509823)
chr3 (18-121)||(26126275-26126378)
chr3 (21-121)||(26176329-26176429)
chr3 (239-307)||(28082922-28082990)
chr3 (14-95)||(26203828-26203909)
chr3 (144-191)||(28135293-28135340)
chr3 (241-307)||(27919546-27919612)
chr3 (241-307)||(28151134-28151200)
chr3 (14-107)||(26109519-26109612)
chr3 (258-307)||(28507044-28507093)
chr3 (146-190)||(28054831-28054875)
chr3 (146-190)||(28065256-28065300)
chr3 (50-125)||(27458047-27458122)
chr3 (48-130)||(27357069-27357151)
chr3 (241-307)||(27979674-27979740)
chr3 (241-307)||(28003392-28003458)
chr3 (55-123)||(28680491-28680559)
chr3 (48-123)||(28163442-28163517)
chr3 (73-123)||(11422017-11422067)
chr3 (89-123)||(27921042-27921076)
chr3 (93-123)||(28057978-28058008)
chr3 (93-123)||(28068403-28068433)
chr3 (48-122)||(28187453-28187527)
chr3 (241-285)||(28036657-28036701)
chr3 (55-123)||(28152487-28152555)
[»] scaffold0257 (2 HSPs)
scaffold0257 (248-307)||(18537-18596)
scaffold0257 (48-122)||(19894-19968)
[»] chr2 (3 HSPs)
chr2 (48-130)||(22400983-22401065)
chr2 (48-130)||(22792687-22792769)
chr2 (48-130)||(22966160-22966242)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 144 - 310
Target Start/End: Original strand, 8692798 - 8692964
Alignment:
Q  144 ctgatgtagtagaaccctccaactaattgcgtgtcataaaaatgtaaaatttagttgcatgcagcatatttctaagaaacacttgaaataaaatatattt 243  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  8692798 ctgatgtagtagaaccctccaactaattgcgtatcataaaaatgtaaaatttagttgcatgcagcatatttgtaagaaacacttgaaataaaatattttt 8692897  T
Q  244 cttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttgccg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8692898 cttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttgccg 8692964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 8692193 - 8692322
Alignment:
Q  1 gaagtacaagaaaatatagtctaatagccaataggggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgat 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8692193 gaagtacaagaaaatatagtctaatagccaataagggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttggagcatgtcaattgat 8692292  T
Q  101 gcttaagatcctccacatgttgactgaaaa 130  Q
    ||||||||||||||||||||||||| ||||    
T  8692293 gcttaagatcctccacatgttgacttaaaa 8692322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 28137265 - 28137145
Alignment:
Q  10 gaaaatatagtctaatagccaataggggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagat 109  Q
    ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  28137265 gaaaatatagtctaataaccaataggtgcacttaaaaccgcctcttgttgaattatattcttcaaaacagctttagaggatgtcaattgatgcttaagat 28137166  T
Q  110 cctccacatgttgactgaaaa 130  Q
    | |||||||||||||| ||||    
T  28137165 cttccacatgttgacttaaaa 28137145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 28479061 - 28479182
Alignment:
Q  9 agaaaatatagtctaatagccaataggggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaaga 108  Q
    |||||||||| |||||||||| | ||||||||||||||| |||||||||||||| ||| ||| |||||||||||  ||| |||||||||| |||||||||    
T  28479061 agaaaatataatctaatagccgaaaggggcacttaaaaccgcctcttgttgaatgatagtctccaaaacagcttcagaggatgtcaattgttgcttaaga 28479160  T
Q  109 tcctccacatgttgactgaaaa 130  Q
    || |||||||||||||| ||||    
T  28479161 tcttccacatgttgacttaaaa 28479182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 26138411 - 26138530
Alignment:
Q  11 aaaatatagtctaatagccaataggggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatc 110  Q
    ||||||||||||||||||||||||||||||| |||||  ||||||||||||| |||  || ||||||| |||  ||| ||||||| || |||||||||||    
T  26138411 aaaatatagtctaatagccaataggggcactcaaaaccacctcttgttgaatgatacgctccaaaacaacttcagaggatgtcaactgttgcttaagatc 26138510  T
Q  111 ctccacatgttgactgaaaa 130  Q
     |||||||||||||| ||||    
T  26138511 ttccacatgttgacttaaaa 26138530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 28149176 - 28149117
Alignment:
Q  248 tttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 307  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28149176 tttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttg 28149117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 28508201 - 28508308
Alignment:
Q  14 atatagtctaatagccaataggggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctc 113  Q
    |||||||||||||||| |||||||||  ||||||| ||||||||||||| ||| ||| |||||||||||  ||| |||||||||| ||||||||||| ||    
T  28508201 atatagtctaatagccgataggggcatgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttc 28508300  T
Q  114 cacatgtt 121  Q
    ||| ||||    
T  28508301 cacctgtt 28508308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 26231835 - 26231945
Alignment:
Q  11 aaaatatagtctaatagccaataggggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatc 110  Q
    ||||||||||||||||||||| ||||||||||||| |  ||||||||||| | ||| ||| ||||| |||||  ||| |||||||||||||||||||| |    
T  26231835 aaaatatagtctaatagccaacaggggcacttaaagccacctcttgttgattgatactctccaaaatagcttgagaggatgtcaattgatgcttaagaac 26231934  T
Q  111 ctccacatgtt 121  Q
     ||||||||||    
T  26231935 ttccacatgtt 26231945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 28185052 - 28184984
Alignment:
Q  239 tatttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 307  Q
    |||||| ||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||    
T  28185052 tatttcatttttagctttatatgcacaacgcggtggtacgacattacatgatttacctgagaaggtttg 28184984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 28054661 - 28054593
Alignment:
Q  239 tatttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 307  Q
    |||||| |||||| |||||||||||| |||||||||||| ||| |||||||||||||||||||||||||    
T  28054661 tatttcatttttatctttatatgcacgatgcagtggtacaataatacatgatttacctgagaaggtttg 28054593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 28065086 - 28065018
Alignment:
Q  239 tatttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 307  Q
    |||||| |||||| |||||||||||| |||||||||||| ||| |||||||||||||||||||||||||    
T  28065086 tatttcatttttatctttatatgcacgatgcagtggtacaataatacatgatttacctgagaaggtttg 28065018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 28161210 - 28161142
Alignment:
Q  239 tatttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 307  Q
    |||||| ||||||||||||||||||||| || ||| ||||| |||||||||||||||||||||||||||    
T  28161210 tatttcatttttagctttatatgcacaacgcggtgttacgacattacatgatttacctgagaaggtttg 28161142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 28480584 - 28480640
Alignment:
Q  251 agctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 307  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28480584 agctttttatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttg 28480640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 28509767 - 28509823
Alignment:
Q  251 agctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 307  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  28509767 agctttatatgcacaatgcggtggtacgatattacttgatttacctgagaaggtttg 28509823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 26126275 - 26126378
Alignment:
Q  18 agtctaatagccaataggggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccaca 117  Q
    |||||||||||||| ||||||||||||| |  ||||||||||| | ||| ||| |||||||||||  ||| ||| |||||||||||||||| | ||||||    
T  26126275 agtctaatagccaacaggggcacttaaagccacctcttgttgattgatactctccaaaacagcttgagaggatgccaattgatgcttaagaacttccaca 26126374  T
Q  118 tgtt 121  Q
    ||||    
T  26126375 tgtt 26126378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 26176329 - 26176429
Alignment:
Q  21 ctaatagccaataggggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgt 120  Q
    ||||||||||| ||||||||||||| |  ||||||||||| | ||| ||| |||||||||||  ||| ||| |||||||||||||||| | |||||||||    
T  26176329 ctaatagccaacaggggcacttaaagccacctcttgttgattgatactctccaaaacagcttgagaggatgccaattgatgcttaagaacttccacatgt 26176428  T
Q  121 t 121  Q
    |    
T  26176429 t 26176429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 28082990 - 28082922
Alignment:
Q  239 tatttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 307  Q
    |||||| ||||||||||||||||||||||| | ||||| |||||| |||||||||||||| ||||||||    
T  28082990 tatttcatttttagctttatatgcacaatgtattggtatgatattgcatgatttacctgaaaaggtttg 28082922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 26203828 - 26203909
Alignment:
Q  14 atatagtctaatagccaataggggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaa 95  Q
    |||||||||||||||||||||||| ||| |||||  ||||||||||||| ||| ||| |||||||||||  ||| |||||||    
T  26203828 atatagtctaatagccaataggggaactgaaaaccacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaa 26203909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 28135340 - 28135293
Alignment:
Q  144 ctgatgtagtagaaccctccaactaattgcgtgtcataaaaatgtaaa 191  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||    
T  28135340 ctgatgtagtagaaccctccaactaattgcatatcataaaaatgtaaa 28135293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 27919612 - 27919546
Alignment:
Q  241 tttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 307  Q
    |||||||||||||||||||| |||||||  ||||||| ||||||||| |||| | ||||||||||||    
T  27919612 tttcttttttagctttatattcacaatgaggtggtactatattacattattttcttgagaaggtttg 27919546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 28151200 - 28151134
Alignment:
Q  241 tttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 307  Q
    |||||||||||| |||||||||||||||  ||||||| ||||||||| |||| | ||||||||||||    
T  28151200 tttcttttttagatttatatgcacaatgaggtggtactatattacattattttcttgagaaggtttg 28151134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 26109519 - 26109612
Alignment:
Q  14 atatagtctaatagccaataggggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaag 107  Q
    ||||| ||||||||||||||||||| ||||||||  ||||||||||||| ||| ||| ||| | |||||  ||| |||||||||| || |||||    
T  26109519 atataatctaatagccaataggggcccttaaaaccacctcttgttgaatgatactctccaagaaagcttcagaggatgtcaattgttgattaag 26109612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 28507044 - 28507093
Alignment:
Q  258 tatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 307  Q
    |||||||||||  ||||||||||||||||||||||||| |||||||||||    
T  28507044 tatgcacaatgtggtggtacgatattacatgatttaccggagaaggtttg 28507093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 28054875 - 28054831
Alignment:
Q  146 gatgtagtagaaccctccaactaattgcgtgtcataaaaatgtaa 190  Q
    |||||||||||||||||||||||||||| | ||||||||||||||    
T  28054875 gatgtagtagaaccctccaactaattgcatatcataaaaatgtaa 28054831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 28065300 - 28065256
Alignment:
Q  146 gatgtagtagaaccctccaactaattgcgtgtcataaaaatgtaa 190  Q
    |||||||||||||||||||||||||||| | ||||||||||||||    
T  28065300 gatgtagtagaaccctccaactaattgcatatcataaaaatgtaa 28065256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 27458047 - 27458122
Alignment:
Q  50 cctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttgact 125  Q
    |||||| |||||| ||| ||||||||||||  |  ||| |||||||||||||||||||||| ||||||| ||||||    
T  27458047 cctctttttgaataatactcttcaaaacagtctccgaggatgtcaattgatgcttaagatcttccacattttgact 27458122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 27357151 - 27357069
Alignment:
Q  48 tgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttgactgaaaa 130  Q
    |||||||| |||||| ||| ||||||||||||  |  |||  ||||| ||||||||||||||| |||||||||||||| ||||    
T  27357151 tgcctcttcttgaatgatactcttcaaaacagtctcagaggttgtcagttgatgcttaagatcttccacatgttgacttaaaa 27357069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 27979740 - 27979674
Alignment:
Q  241 tttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 307  Q
    |||||||||||||||||||| |||||||  ||||||| ||||||||| |||| |  |||||||||||    
T  27979740 tttcttttttagctttatattcacaatgaggtggtactatattacattattttctggagaaggtttg 27979674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 28003458 - 28003392
Alignment:
Q  241 tttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 307  Q
    |||||||||||| ||||||||||| |||  ||||||| ||||||||| |||| | ||||||||||||    
T  28003458 tttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttg 28003392  T

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Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 28680491 - 28680559
Alignment:
Q  55 tgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttga 123  Q
    |||||||| ||| ||| |||||||||||  ||  ||||||| |||||||||||||| ||||||||||||    
T  28680491 tgttgaatgatagtctccaaaacagcttcagaagatgtcaaatgatgcttaagatcttccacatgttga 28680559  T

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Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 28163517 - 28163442
Alignment:
Q  48 tgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttga 123  Q
    |||||| |||||| | || |||| |||||||||||  ||| | | ||||||||||||||||||| |||||||||||    
T  28163517 tgcctcctgttgagtgatgttctgcaaaacagcttcagaggaagccaattgatgcttaagatccgccacatgttga 28163442  T

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Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 11422067 - 11422017
Alignment:
Q  73 aaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttga 123  Q
    |||||||||| |||| | | |||||||||||||||||||||||| ||||||    
T  11422067 aaaacagcttcggaggaagccaattgatgcttaagatcctccacgtgttga 11422017  T

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Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 27921076 - 27921042
Alignment:
Q  89 atgtcaattgatgcttaagatcctccacatgttga 123  Q
    |||||||||||||||||||||| ||||||||||||    
T  27921076 atgtcaattgatgcttaagatcttccacatgttga 27921042  T

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Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 123
Target Start/End: Complemental strand, 28058008 - 28057978
Alignment:
Q  93 caattgatgcttaagatcctccacatgttga 123  Q
    |||||||||||||||||||||||||||||||    
T  28058008 caattgatgcttaagatcctccacatgttga 28057978  T

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Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 123
Target Start/End: Complemental strand, 28068433 - 28068403
Alignment:
Q  93 caattgatgcttaagatcctccacatgttga 123  Q
    |||||||||||||||||||||||||||||||    
T  28068433 caattgatgcttaagatcctccacatgttga 28068403  T

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Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 28187527 - 28187453
Alignment:
Q  48 tgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttg 122  Q
    |||||| |||||| | || |||| |||||||||||   || | | ||||||||||||||||||||||||||||||    
T  28187527 tgcctcctgttgagtgatgttctgcaaaacagcttcacaggaagccaattgatgcttaagatcctccacatgttg 28187453  T

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Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 28036701 - 28036657
Alignment:
Q  241 tttcttttttagctttatatgcacaatgcagtggtacgatattac 285  Q
    |||| |||||||||||||||||||||||  ||||||| |||||||    
T  28036701 tttcatttttagctttatatgcacaatgaggtggtactatattac 28036657  T

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Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 28152555 - 28152487
Alignment:
Q  55 tgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttga 123  Q
    |||||||| ||| ||| |||| ||||||  ||| |||||||||||||||||||||| || | |||||||    
T  28152555 tgttgaatgatagtctccaaatcagcttcagaggatgtcaattgatgcttaagatcttcaagatgttga 28152487  T

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Target: scaffold0257 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 18596 - 18537
Alignment:
Q  248 tttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 307  Q
    |||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||    
T  18596 tttagctttatatgcacaatgcggttgtaggatattacatgatttacctgagaaggtttg 18537  T

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Target: scaffold0257; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 19968 - 19894
Alignment:
Q  48 tgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttg 122  Q
    ||||||||||||| | ||  ||| |||||||||||  ||| | | |||||||||||||||||||| |||||||||    
T  19968 tgcctcttgttgagtgatgctctgcaaaacagcttcagaggaagccaattgatgcttaagatccttcacatgttg 19894  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 22401065 - 22400983
Alignment:
Q  48 tgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttgactgaaaa 130  Q
    |||||||| |||||| ||| ||||||||||||  |  |||  ||||| ||||||||||||||| |||||||||||||| ||||    
T  22401065 tgcctcttcttgaatgatactcttcaaaacagtctcagaggttgtcagttgatgcttaagatcttccacatgttgacttaaaa 22400983  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 22792769 - 22792687
Alignment:
Q  48 tgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttgactgaaaa 130  Q
    |||||||| |||||| ||| ||||||||||||  |  |||  ||||| ||||||||||||||| |||||||||||||| ||||    
T  22792769 tgcctcttcttgaatgatactcttcaaaacagtctcagaggttgtcagttgatgcttaagatcttccacatgttgacttaaaa 22792687  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 22966242 - 22966160
Alignment:
Q  48 tgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttgactgaaaa 130  Q
    |||||||| |||||| ||| ||||||||||||  |  |||  ||||| ||||||||||||||| |||||||||||||| ||||    
T  22966242 tgcctcttcttgaatgatactcttcaaaacagtctcagaggttgtcagttgatgcttaagatcttccacatgttgacttaaaa 22966160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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