View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16223_high_8 (Length: 328)
Name: NF16223_high_8
Description: NF16223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16223_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 3016843 - 3016541
Alignment:
| Q |
11 |
gagcacagacacttcaaattgaacgtgtatcttgtgtacaacaacagacaagtatcaatgtcggatactgacattttagattgaaaaacgtgtcgcttgt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016843 |
gagcacagacacttcaaattgaacgtgtatcttgtgtacaacaacagacaagtatcaatgtcggatactgacattttagattgaaaaacgtgtcgcttgt |
3016744 |
T |
|
| Q |
111 |
ccaacaaccgacaagtatccatgtctgacaccgacacattgatttcattggactactttagctttatcaaattattactagtgttgacgtatcaatgtca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3016743 |
ccaacaaccgacaagtatccatgtctgacaccgacacattgatttcattggactactttagctttatcaaattattactagtgttgacgtatcagtgtca |
3016644 |
T |
|
| Q |
211 |
gtgatgtgtctgtatccatgtcagtgcttcatagatgaccgtgtcccatttattttatcccnnnnnnnctttctctccatattttaacatgaggatgttt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3016643 |
gtgatgtgtctgtatccatgtcagtgcttcatagatgaccgtgtcccatttattttatccctttttttctttctctccatattttaacatgaggatgttt |
3016544 |
T |
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| Q |
311 |
atg |
313 |
Q |
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||| |
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| T |
3016543 |
atg |
3016541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 19941743 - 19941702
Alignment:
| Q |
172 |
ctttatcaaattattactagtgttgacgtatcaatgtcagtg |
213 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
19941743 |
ctttctcaaattattactagtgttgatgtatcaatgtcagtg |
19941702 |
T |
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