View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16223_low_13 (Length: 290)
Name: NF16223_low_13
Description: NF16223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16223_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 1680594 - 1680333
Alignment:
| Q |
19 |
ccacctcttacatttttcatccattgaagcccaaaatgacgggttcactgttaaactcattcggaaatcatctcaccgttcatctaacaatattcaagat |
118 |
Q |
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| T |
1680594 |
ccacctcttacatttttcatccattgaagcccaaaatgacgggttcactgttaaactcattcggaagtcatctcacctttcatctaacaatattcaagat |
1680495 |
T |
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| Q |
119 |
attgtacaagcacctataaatgcatatattggccaatatctcatggagttgtatattggaactccaccaataaaaatatcaggtaccgtagacacgggaa |
218 |
Q |
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| T |
1680494 |
attgtacaagcacctataaatgcatatattggccaatatctcatggagttgtatattggaactccaccaataaaaatatcaggtaccgtagacacgggaa |
1680395 |
T |
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| Q |
219 |
gtgacctgatatgggtccaatgtgtaccttgtttagggtgctacaaccaaataaaccctatg |
280 |
Q |
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| T |
1680394 |
gtgacctgatatgggtccaatgtgtaccttgtttagggtgctacaaccaaataaaccctatg |
1680333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 26 - 273
Target Start/End: Complemental strand, 1669039 - 1668804
Alignment:
| Q |
26 |
ttacatttttcatccattgaagcccaaaatgacgggttcactgttaaactcattcggaaatcatctcaccgttcatctaacaatattcaagatattgtac |
125 |
Q |
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| T |
1669039 |
ttacatttgtcatccattgaagcccaaaatgacgggttcactatcaaactgtttcgtaaaacatct------------aacaatattcaaaatattgtac |
1668952 |
T |
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| Q |
126 |
aagcacctataaatgcatatattggccaatatctcatggagttgtatattggaactccaccaataaaaatatcaggtaccgtagacacgggaagtgacct |
225 |
Q |
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| T |
1668951 |
aagcacctataaatgcctatattggccaacatctcatggaaatatatattggaactccaccaataaaaataacaggccttgtagacacaggaagtgatct |
1668852 |
T |
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| Q |
226 |
gatatgggtccaatgtgtaccttgtttagggtgctacaaccaaataaa |
273 |
Q |
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| T |
1668851 |
tatatggatccaatgtgcaccttgtttaggttgctacaaacaaataaa |
1668804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 1661579 - 1661510
Alignment:
| Q |
30 |
atttttcatccattgaagcccaaaatgacgggttcactgttaaactcattcggaaatcatctcaccgttc |
99 |
Q |
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| T |
1661579 |
attttttatccattgaagcccaaaatgacgggttcaccgtcaaactgcttcgtaaaacatctaaccgttc |
1661510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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