View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16223_low_14 (Length: 289)
Name: NF16223_low_14
Description: NF16223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16223_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 38 - 280
Target Start/End: Complemental strand, 812601 - 812361
Alignment:
| Q |
38 |
tgtgatgtagagttccaaactactttacattgtaattaactttaatcgataatttgagattagactgttaagattacacatcagttttagtgaagctgta |
137 |
Q |
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| T |
812601 |
tgtgatgtagagttccaaactactttacattgtaattaattttaatcgataatttgagattagactgttaagattacacatcaattttagtgaagctgta |
812502 |
T |
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| Q |
138 |
tgatctcagccgttaaaccaaatcggacagttgagagtagtaaatgtgccacacaagttaatgcaccaactccaaattcattgcggattctcttagtttg |
237 |
Q |
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| T |
812501 |
tgatctcagccgttaaaccaaatcggacagttgagagaagtaaatgtgccacacaagttaatgcaccaactccaaattcattgtggattctcttagtttg |
812402 |
T |
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| Q |
238 |
tgatataaactaatatttcatttcattttatattcatctcact |
280 |
Q |
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| T |
812401 |
tgaaataaa--actatttcatttcattttatattcatttcact |
812361 |
T |
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