View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16223_low_2 (Length: 533)
Name: NF16223_low_2
Description: NF16223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16223_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 63 - 395
Target Start/End: Complemental strand, 10203051 - 10202718
Alignment:
| Q |
63 |
atcataatcattatcacattcaatcttcaa-tatggaatatcaacaacaatccaggaccacaccaaaacaagaactaccacctctagtagccatgtttcc |
161 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10203051 |
atcataatcattatcaccttcaatcttcaaatatggaatatcaacaacaatccaggaccacaccaaaacaagaactaccacctctagtagccatgtttcc |
10202952 |
T |
|
| Q |
162 |
aactccaggaatgggacatctcattccaatggtcgaattcgccaagagactctccaaacataaccttcccatcaccttcatcatccccaacgacggtcca |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10202951 |
aactccaggaatgggacatctcattccaatggtcgaattcgccaagagactctccaaacataaccttcccatcaccttcatcatccccaacgacggtcca |
10202852 |
T |
|
| Q |
262 |
ccttcaaaggctcaaaccaccgtactcacctccctacctcatggcatttcccacgtcttccttcctccggtcaccctctccgacctcccacccaacacca |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10202851 |
ccttcaaaggctcaaaccaccgtactcacctccctacctcatggcatttcccacgtcttccttcctccgatcaccctctccgacctcccacccaacacca |
10202752 |
T |
|
| Q |
362 |
aacccgaaacactcatgacagcaacaaccgttcg |
395 |
Q |
| |
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|||||||||||||||||||||| || |||||||| |
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| T |
10202751 |
aacccgaaacactcatgacagccaccaccgttcg |
10202718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 63 - 379
Target Start/End: Complemental strand, 10210123 - 10209807
Alignment:
| Q |
63 |
atcataatcattatcacattcaatcttcaatatggaatatcaacaacaatccaggaccacaccaaaacaagaactaccacctctagtagccatgtttcca |
162 |
Q |
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| T |
10210123 |
atcataaccattatcaccttcaatcttcaatatggaatatcaacaacaatccaggaccacaccaaaacaagaactaccacctctagtagccatgtttcca |
10210024 |
T |
|
| Q |
163 |
actccaggaatgggacatctcattccaatggtcgaattcgccaagagactctccaaacataaccttcccatcaccttcatcatccccaacgacggtccac |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10210023 |
actccaggaatgggacatctcattccaatggtcgaattcgccaagagactctccaaacataaccttcccatcaccttcatcatccccaacgacggtccac |
10209924 |
T |
|
| Q |
263 |
cttcaaaggctcaaaccaccgtactcacctccctacctcatggcatttcccacgtcttccttcctccggtcaccctctccgacctcccacccaacaccaa |
362 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10209923 |
cttcaaaggctcaaacaaccgtactcacctccctacctcatggcatttcccacgtcttcctccctccggtcaccctctccgacctcccacccaacaccaa |
10209824 |
T |
|
| Q |
363 |
acccgaaacactcatga |
379 |
Q |
| |
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||| ||| ||||||||| |
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| T |
10209823 |
acctgaaccactcatga |
10209807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 461 - 523
Target Start/End: Complemental strand, 10202652 - 10202590
Alignment:
| Q |
461 |
ttgttgacctattcggcaccgatgtctttgacatggccgctgaactagatatcccttcatatc |
523 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10202652 |
ttgtcgacctattcggcactgatgtctttgacatggccgctgaactagatatcccttcatatc |
10202590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 466 - 523
Target Start/End: Complemental strand, 10209720 - 10209663
Alignment:
| Q |
466 |
gacctattcggcaccgatgtctttgacatggccgctgaactagatatcccttcatatc |
523 |
Q |
| |
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|||||||| || ||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
10209720 |
gacctatttggtaccgatgcctttgacatggccgctgaactagatatcccttcgtatc |
10209663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 10203107 - 10203078
Alignment:
| Q |
3 |
cgacctttgctccaaccaaaagcacaaaag |
32 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
10203107 |
cgacctttgctccaaccaaaagcacaaaag |
10203078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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