View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16223_low_3 (Length: 469)
Name: NF16223_low_3
Description: NF16223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16223_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 171 - 451
Target Start/End: Complemental strand, 29101111 - 29100831
Alignment:
| Q |
171 |
caggttcattgcaggtggaggacttggccgcacacgtacttgcagtttgtcgctaatcaagtcacagttcgtgggtgcaatcacggaaactatatgtgca |
270 |
Q |
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| T |
29101111 |
caggtgcattgcaggtggaggacttggccgcacacgtacttgcagtttgtccctaatcaagtcggagttcgtgtgtgcaatcacggaaactatatgtgca |
29101012 |
T |
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| Q |
271 |
tgaatgctatgcatgcgagctcaagaaataacaaatcatctcggaataatacagctgtataatgaaggtgcagggcacggaacgagagtataagatccag |
370 |
Q |
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||||| |||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
29101011 |
tgaatattatgcatgcgagctcatgaaataaaaaatcatctcggaataacacagctgtataatgaaggtgcagggcacggaaccagagtatacgatccag |
29100912 |
T |
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| Q |
371 |
aatgggtaaaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttatgcaacccctggaac |
451 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29100911 |
aatgggtaaaaccgaactaatattcaatacatttccatattcaacaaatcatcaaacataagcttatgcaaccccttgaac |
29100831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 171 - 451
Target Start/End: Complemental strand, 29063175 - 29062895
Alignment:
| Q |
171 |
caggttcattgcaggtggaggacttggccgcacacgtacttgcagtttgtcgctaatcaagtcacagttcgtgggtgcaatcacggaaactatatgtgca |
270 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
29063175 |
caggtgcattgcaggtggaggacttggccgcacacgtacttgcagtttgtccctaatcaagtcggagttcgtgtgtgcaatcacggaaactatatgtgca |
29063076 |
T |
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| Q |
271 |
tgaatgctatgcatgcgagctcaagaaataacaaatcatctcggaataatacagctgtataatgaaggtgcagggcacggaacgagagtataagatccag |
370 |
Q |
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| T |
29063075 |
tgaatattatgcatgcgagctcatgaaataaaaaatcatctcggaataacacagctgtataatgaaggtgcagggcacgaaaccagagtatacgatccag |
29062976 |
T |
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| Q |
371 |
aatgggtaaaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttatgcaacccctggaac |
451 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29062975 |
aatgggtaaaaccgaactaatattcaatacatttccatattcaacaaatcatcaaacataagcttatgcaaccccttgaac |
29062895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 171 - 451
Target Start/End: Complemental strand, 29118029 - 29117749
Alignment:
| Q |
171 |
caggttcattgcaggtggaggacttggccgcacacgtacttgcagtttgtcgctaatcaagtcacagttcgtgggtgcaatcacggaaactatatgtgca |
270 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
29118029 |
caggtgcattgcaggtggaggacttggccgcacacgtacttgcagtttgtccctaatcaagtcggagttcgtgtgtgcaatcacggaaactatatgtgca |
29117930 |
T |
|
| Q |
271 |
tgaatgctatgcatgcgagctcaagaaataacaaatcatctcggaataatacagctgtataatgaaggtgcagggcacggaacgagagtataagatccag |
370 |
Q |
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||||| |||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| ||||||| |
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| T |
29117929 |
tgaatattatgcatgcgagctcatgaaataaaaaatcatctcggaataacacagctgtataatgaaggtgcagggcacgaaaccagagtatacgatccag |
29117830 |
T |
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| Q |
371 |
aatgggtaaaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttatgcaacccctggaac |
451 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29117829 |
aatgggtaaaaccgaactaatattcaatacatttccatattcaacaaatcatcaaacataagcttatgcaaccccttgaac |
29117749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 171 - 301
Target Start/End: Complemental strand, 29120750 - 29120620
Alignment:
| Q |
171 |
caggttcattgcaggtggaggacttggccgcacacgtacttgcagtttgtcgctaatcaagtcacagttcgtgggtgcaatcacggaaactatatgtgca |
270 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
29120750 |
caggtgcattgcaggtggaggacttggccgcacacgtacttgcagtttgtccctaatcaagtcggagttcgtgtgtgcaatcacggaaactatatgtgca |
29120651 |
T |
|
| Q |
271 |
tgaatgctatgcatgcgagctcaagaaataa |
301 |
Q |
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| T |
29120650 |
tgaatattatgcatgcgagctcatgaaataa |
29120620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 29063514 - 29063457
Alignment:
| Q |
58 |
aactttgggactgattgcttgttcaaattacaatacagtaacaaatactttcctcttt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29063514 |
aactttgggactgattgcttgttcaaattacaatacagtaagaaatactttcctcttt |
29063457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 29101450 - 29101397
Alignment:
| Q |
58 |
aactttgggactgattgcttgttcaaattacaatacagtaacaaatactttcct |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29101450 |
aactttgggactgattgcttgttcaaattacaatacagtaacaaatactttcct |
29101397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 29118368 - 29118311
Alignment:
| Q |
58 |
aactttgggactgattgcttgttcaaattacaatacagtaacaaatactttcctcttt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29118368 |
aactttgggactgattgcttgttcaaattacaatacagtaagaaatactttcctcttt |
29118311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 29121089 - 29121036
Alignment:
| Q |
58 |
aactttgggactgattgcttgttcaaattacaatacagtaacaaatactttcct |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29121089 |
aactttgggactgattgcttgttcaaattacaatacagtaacaaatactttcct |
29121036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 437
Target Start/End: Complemental strand, 4259860 - 4259802
Alignment:
| Q |
379 |
aaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttat |
437 |
Q |
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||||| ||||||||||||||||||| |||||||||| |||| || ||||||||||||| |
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| T |
4259860 |
aaaccaaactaatattcaatgcattctcatattcaaccaatcttccaacataagcttat |
4259802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 437
Target Start/End: Complemental strand, 4263482 - 4263424
Alignment:
| Q |
379 |
aaaccgaactaatattcaatgcatttccatattcaacaaatcatcaaacataagcttat |
437 |
Q |
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||||| ||||||||||||||||||| |||||||||| |||| || ||||||||||||| |
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| T |
4263482 |
aaaccaaactaatattcaatgcattctcatattcaaccaatcttccaacataagcttat |
4263424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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