View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16223_low_4 (Length: 451)
Name: NF16223_low_4
Description: NF16223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16223_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 9247479 - 9247061
Alignment:
| Q |
18 |
agttacatgttaattttaaggtctaatttcatgctttccatggatgaaggcagaaggaatattccgtattactgctgagaatagccaagaagcattcgtt |
117 |
Q |
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| T |
9247479 |
agttacatgttaattttaaggtctaatttcatgctttccatgggtgaaggcagaaggaatattccgtattactgctgagaatagccaagaagcattcgtt |
9247380 |
T |
|
| Q |
118 |
cgagatcagttaaacaaaggcgtagtgccacatggaatcgatgttcattgtttatccggcttgattaaggtatttatcaagatgtttaattcaacttctc |
217 |
Q |
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| T |
9247379 |
cgagatcagttaaacaaaggcgtagtgccacatggaatcgatgttcattgtttatccggcttgattaaggtatttatcaagatgtttaattcaacttctc |
9247280 |
T |
|
| Q |
218 |
tgcataattacaatcaattgaatttcatttggcagaactcatgcgtaacacttccaaagtctttcggttatgtgtataatttgaagtatttgactctctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9247279 |
tgcataattacaatcaattgaatttcatttggcagaactcatgcgtaacacttccaaagtctttcggttatgtgtataatttgaagtatttgactctctt |
9247180 |
T |
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| Q |
318 |
gcaggcttggtttagagaacttccaactggagtacttgattctctcacaccggagcaagtgatgcaatgcaacacagaagacgattgtactaaccttgtc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9247179 |
gcaggcttggtttagagaacttccaactggagtacttgattctctcacaccggagcaagtgatgcaatgcaacacagaagacgattgcactaaccttgtc |
9247080 |
T |
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| Q |
418 |
aagttacttccttccacag |
436 |
Q |
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| T |
9247079 |
aagttacttccttccacag |
9247061 |
T |
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