View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16223_low_5 (Length: 429)
Name: NF16223_low_5
Description: NF16223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16223_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 107 - 407
Target Start/End: Original strand, 48586798 - 48587100
Alignment:
| Q |
107 |
ttgacaggagcagtttaattaagataaacagaaactaatagcctaattactacgcaatggcgaaaaatagaccgcacaacactcta--gcttttgcaaaa |
204 |
Q |
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| T |
48586798 |
ttgacaggagcagtttaattaagataaacagaaactaatagcctaattactatgcaatggcgaaaaatagaccgcacaacactctatagcttttgcaaaa |
48586897 |
T |
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| Q |
205 |
tcacaatggctcaccgtgataccaaacatgcagtaagaaaagtagaaaaggagttaaaagacggacctgccaggaaagagggcatcaaaaacaaaggaaa |
304 |
Q |
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| T |
48586898 |
tcacaatggctcaccgtgataccaaacatgcagtaagaaaagtagaaaaggcgttaaaagacggacctgccaggaaagagggcatcaaaaacaaaggaaa |
48586997 |
T |
|
| Q |
305 |
tcaagtggtgatcgggattgttgggatcctggtaaagctgcagagtgtgtttatgcaagttcacatcattccttaccttctttgcagtttcatggtcagt |
404 |
Q |
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| T |
48586998 |
tcaagtggtgatcgggattgttgggatcctggtaaagctgcagagtgtgtttatgcaagttcacatcattccttaccttctttgcagtttcatggtcagt |
48587097 |
T |
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| Q |
405 |
gta |
407 |
Q |
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||| |
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| T |
48587098 |
gta |
48587100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 48586627 - 48586716
Alignment:
| Q |
18 |
cattcaattatttaaatattttcttcataatcagtaaaacaaacaagcaaaatggttgtaactttcagctctaagtctaaccacctaatt |
107 |
Q |
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| T |
48586627 |
cattcaattatttaaatattttcttcataatcagtaaaacaaacaagcaaaatggttgtaattttcagctctaagtctaaccacctaatt |
48586716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 383
Target Start/End: Complemental strand, 25600998 - 25600958
Alignment:
| Q |
343 |
tgcagagtgtgtttatgcaagttcacatcattccttacctt |
383 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||| |
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| T |
25600998 |
tgcaaagtgtgtttatgcaagttcacatcactccttacctt |
25600958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 226
Target Start/End: Complemental strand, 14546485 - 14546454
Alignment:
| Q |
195 |
ttttgcaaaatcacaatggctcaccgtgatac |
226 |
Q |
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| T |
14546485 |
ttttgcaaaatcacaatggctcaccgtgatac |
14546454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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