View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16224_low_1 (Length: 400)
Name: NF16224_low_1
Description: NF16224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16224_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 2 - 383
Target Start/End: Complemental strand, 14220277 - 14219896
Alignment:
| Q |
2 |
caaagtgatttggtggcttgttgaattgttcgttgtggtgggttttttattatctggtatagtcttgtcgctgacagtatcttcggatcaggagtggtag |
101 |
Q |
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| T |
14220277 |
caaagtgatttggtggattgttgaattgttcaatgtggtgggttttttattatctggtatagtcttgtcgctgacagtatcttcggatcaggagtggtag |
14220178 |
T |
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| Q |
102 |
cacttctgatggtttgctgatgggggtgtttattggggatattattatgtagcatctctcagtctagctagggagtattcgagtaacgtggatcggtatg |
201 |
Q |
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| T |
14220177 |
cacttctgatggtttgctgatgggggtgtttattggggatattattatgtagcatctctcagtctagctagggagtattcgagtaacgtggatcggtatg |
14220078 |
T |
|
| Q |
202 |
ttttttgatcaaaggaaaggaactcaagtaagcaaatggtacatagtcatctgatatgtaatcaaattaactcagcaatgagctcatcgtcggaggcttg |
301 |
Q |
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| T |
14220077 |
ttttttgatcaaaggaaaggaactcaagtaagcaaatggtacatagtcatctgatatgtaatcaaattaactcagcaatgagctcatcgtcggaggcttg |
14219978 |
T |
|
| Q |
302 |
cataagatctcagtttaatgcatctgttgatagttagcaggttagtcaatgtttagatcgcttgcagttgctggaaggtgat |
383 |
Q |
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| T |
14219977 |
cataagatctcagtttaatgcatctgttgataattagcaggttagtccatgtttagatcgcttgcagttgctggaaggtgat |
14219896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 100 - 273
Target Start/End: Complemental strand, 14230240 - 14230071
Alignment:
| Q |
100 |
agcacttctgatggtttgctgatggg-ggtgtttattggggatattattatgtagcatctctcagtctagctagggagtattcgagtaacgtggatcggt |
198 |
Q |
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| T |
14230240 |
agcagttctgatggtttgctgatgcaaggtgtttattggggatat------ggagcatcagtcagtctagacagggagtattcgagtaatgtggatcagt |
14230147 |
T |
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| Q |
199 |
a-tgttttttgatcaaaggaaaggaactcaagtaagcaaatggtacatagtcatctgatatgtaatcaaattaact |
273 |
Q |
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| | |||||| ||||||||||||||||||| || |||||||| ||||| |||| |||||||||||||||||||||| |
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| T |
14230146 |
aatttttttttatcaaaggaaaggaactcatgtcagcaaatgttacatggtcacctgatatgtaatcaaattaact |
14230071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 288 - 383
Target Start/End: Complemental strand, 14229989 - 14229894
Alignment:
| Q |
288 |
tcgtcggaggcttgcataagatctcagtttaatgcatctgttgatagttagcaggttagtcaatgtttagatcgcttgcagttgctggaaggtgat |
383 |
Q |
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| T |
14229989 |
tcgtcggaggattgcataagatctcagtttaatgaatctgttgatagtaagtaggttagtcaaagttttgatcgtttgcagtagctggaagttgat |
14229894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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