View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16225_high_1 (Length: 880)
Name: NF16225_high_1
Description: NF16225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16225_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 448 - 857
Target Start/End: Complemental strand, 27712309 - 27711901
Alignment:
| Q |
448 |
gagctagcggcagtagaggtggacccaaattaaaggtcaccatgagtagacatcagaagaaaatcaaatgtagtccctaacataacacgtagcataaaac |
547 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27712309 |
gagctagtggcagtagaggtggacccaaattaaaggtcaccataagtagacatcagaagaaaatcaaatgtagtccctaacataacacgtagcataaaac |
27712210 |
T |
|
| Q |
548 |
acatgctattaacccaaaataacaacaccgacaaccaaaattaacaaaaatagtccctctcactcttcactttcacaaagtatggacaagagatacaaga |
647 |
Q |
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| T |
27712209 |
acatgctattaacccaaaataacaacaccgacaacccaaattaacaaaaatagtccctctcactcttcactttcacaaagtatggacaagagatacaaga |
27712110 |
T |
|
| Q |
648 |
gcacaataacaccagtcattatatgtctttctctaaaataacacagtaactactaacccacaactccataacataaaagcaatctttactcaagatccaa |
747 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| |
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| T |
27712109 |
gcacaataacaccattcattttatgtctttctctaaaataacacagtaactactaacccacaactccttaacataaaaacaatccttactcaagatccaa |
27712010 |
T |
|
| Q |
748 |
aacacattacccccaccgttgcatctttcaacaaaacccaatctcctttctaatttcgttattgctaaattcaacttttttacaagaagctcatttgtta |
847 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
27712009 |
aatacattacccccaccgttgtatctttcaacaaaacccaatctcctttctaatttcgttattgct-aattcatcttttttacaagaagctcatttgtta |
27711911 |
T |
|
| Q |
848 |
tgcaatatac |
857 |
Q |
| |
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|||||||||| |
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| T |
27711910 |
tgcaatatac |
27711901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 9 - 387
Target Start/End: Complemental strand, 27712768 - 27712388
Alignment:
| Q |
9 |
acatcatcacactttttcttcacacaattgagcccaagtaaaaacccgaaaatctcttattccaagctcatttggattccaccaccaatctaactctcgt |
108 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27712768 |
acatcatcacaccttttcttcacacaattgagcccaagtaaaaacccgaaaatctcttattccaagctcattcggattccaccaccaatctaactctcgt |
27712669 |
T |
|
| Q |
109 |
ttgttggttaagacatcataatatgcccaaaaacttgagtctagaagctttctcgctatctnnnnnnnnnnnnnnn--tcaatcggtccaccagactccg |
206 |
Q |
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||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27712668 |
ttgctggttaagacatcataatatgcccaaaaacttgagtatagaagctttctcgctatctaaaaataaaataaaaaatcaatcggtccaccagactccg |
27712569 |
T |
|
| Q |
207 |
aaaacaaatcactaaggcacccctaaactctcggcataacgtaaaagacaccataaccagcccaaaaacttgcaattaaacactaacatccgatctcaaa |
306 |
Q |
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| T |
27712568 |
aaaacaaatcaccaagggacccctaaactctcggtctaacgtaaaagacaccataaccaacccagaaacctgcaattaaacactaacatccgatctcaaa |
27712469 |
T |
|
| Q |
307 |
acaaaagcgattgacctccataattcaaaaaccaaatcactaaggcagtcaaccgatgatgcggtagcgtaatttggtcca |
387 |
Q |
| |
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| T |
27712468 |
acaaaagcgattgacctctagaattcaaaaaccaaatcactaagacagtcaaccgatgatgcggtggcgcaatttggtcca |
27712388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 317
Target Start/End: Complemental strand, 24712603 - 24712536
Alignment:
| Q |
251 |
aagacaccataaccagcccaa-aaacttgcaattaaacactaacatccgatctcaaaacaaaagcgat |
317 |
Q |
| |
|
|||||||||| ||||||| || ||||||||||||| ||||||||| |||||||| || ||||| |||| |
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| T |
24712603 |
aagacaccatgaccagccaaacaaacttgcaattagacactaacaaccgatctcgaagcaaaaacgat |
24712536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 51065897 - 51065931
Alignment:
| Q |
188 |
atcggtccaccagactccgaaaacaaatcactaag |
222 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| |
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| T |
51065897 |
atcggtccaccagactcccaaaacaaatcactaag |
51065931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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