View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16225_high_3 (Length: 523)
Name: NF16225_high_3
Description: NF16225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16225_high_3 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 26 - 483
Target Start/End: Complemental strand, 15899944 - 15899487
Alignment:
| Q |
26 |
ggtcaaatttaagatttagggcttccgggcattggtcatcaacattttccataaagtgtagcaaagaacatccatccacaaacaatatccaagcaagatc |
125 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15899944 |
ggtcaaacttaaggtttagggcatccgggcattggtcatcaacattttccataaagtgtagcaaagaacatccatccacaaacaatatccaagcaagatc |
15899845 |
T |
|
| Q |
126 |
attatcattgtagccttcaattgcatcctcagtgaacatattcttcaattcttcaatattatcttcaatctttttaagcaaaagcttacatgcttcgcta |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || |
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|
| T |
15899844 |
attatcattgtagccttcaattgcatcctcagtgaacatattcttcaaatcttcaatattatcttcaatctttttaagcaaaagcatacatgcttcgtta |
15899745 |
T |
|
| Q |
226 |
tcatctttatcaannnnnnngccataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagatttttagcattgtgatgaa |
325 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15899744 |
gcatctttatcaatttttttgccataatcagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagatttttagcattgtgatgaa |
15899645 |
T |
|
| Q |
326 |
taggaccaaatgatataatctttggtgtacaatacttataaaatctttcattttgccgcaaaaacattggaaccctttggatcttaggaatcaaaatttg |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
15899644 |
taggaccaaatgatataatctttggtgtacaatacttataaaatctttcattttgccgcaaaaacattggaaccctttggatcctaggaatcaaaatttc |
15899545 |
T |
|
| Q |
426 |
attatttcgatcaaacctctgttgtgcctctttgagttgcaaaaaccttttatccata |
483 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
15899544 |
attatttcgatcaaacctttcttgtgcctctttgagttgcgaaagccttttatccata |
15899487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 26 - 483
Target Start/End: Complemental strand, 15920972 - 15920515
Alignment:
| Q |
26 |
ggtcaaatttaagatttagggcttccgggcattggtcatcaacattttccataaagtgtagcaaagaacatccatccacaaacaatatccaagcaagatc |
125 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15920972 |
ggtcaaacttaaggtttagggcatccgggcattggtcatcaacattttccataaagtgtagcaaagaacatccatccacaaacaatatccaagcaagatc |
15920873 |
T |
|
| Q |
126 |
attatcattgtagccttcaattgcatcctcagtgaacatattcttcaattcttcaatattatcttcaatctttttaagcaaaagcttacatgcttcgcta |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| || |
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|
| T |
15920872 |
attatcattgtagccttcaattgcatcctcagtgaacatattcttcaaatattcaatattatcttcaatctttttaagcaaaagcatacatgcttcgtta |
15920773 |
T |
|
| Q |
226 |
tcatctttatcaannnnnnngccataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagatttttagcattgtgatgaa |
325 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15920772 |
acatctttatcaatttttttgccataataagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagatttttagcattgtgatgaa |
15920673 |
T |
|
| Q |
326 |
taggaccaaatgatataatctttggtgtacaatacttataaaatctttcattttgccgcaaaaacattggaaccctttggatcttaggaatcaaaatttg |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
15920672 |
taggaccaaatgatataatctttggtgtacaatacttataaaatctttcattttgccgcaaaaacattggaaccctttggatcctaggaatcaaaatttc |
15920573 |
T |
|
| Q |
426 |
attatttcgatcaaacctctgttgtgcctctttgagttgcaaaaaccttttatccata |
483 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
15920572 |
attatttcgatcaaacctttcttgtgcctctttgagttgtgaaagccttttatccata |
15920515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 26 - 483
Target Start/End: Original strand, 15874125 - 15874582
Alignment:
| Q |
26 |
ggtcaaatttaagatttagggcttccgggcattggtcatcaacattttccataaagtgtagcaaagaacatccatccacaaacaatatccaagcaagatc |
125 |
Q |
| |
|
||||||| ||||| |||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15874125 |
ggtcaaacttaaggtttagggcattcgggcattggtcatcaacatttcccataaagtgtagcaaagaacatccatccacaaacaatatccaagcaagatc |
15874224 |
T |
|
| Q |
126 |
attatcattgtagccttcaattgcatcctcagtgaacatattcttcaattcttcaatattatcttcaatctttttaagcaaaagcttacatgcttcgcta |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15874225 |
attatcattgtagccttcaattgcatcctcagtgaacatattcttcacattttcaatattatcttcaatctttttaagcaaaagcttacatgcttcgtta |
15874324 |
T |
|
| Q |
226 |
tcatctttatcaannnnnnngccataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagatttttagcattgtgatgaa |
325 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15874325 |
tcatctttatcaatttttttggcataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagatttttagcattgtgatgaa |
15874424 |
T |
|
| Q |
326 |
taggaccaaatgatataatctttggtgtacaatacttataaaatctttcattttgccgcaaaaacattggaaccctttggatcttaggaatcaaaatttg |
425 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| | |
|
|
| T |
15874425 |
taggaccaaatgatataatctttggtgaacaatacttataaaatctttcattttgccgcaaaaatattggaaccctttggatcttaggaatcgaaattcg |
15874524 |
T |
|
| Q |
426 |
attatttcgatcaaacctctgttgtgcctctttgagttgcaaaaaccttttatccata |
483 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
15874525 |
attatttcgatcaaacctttcttgtgcctctttgagttgcgaaagtcttttatccata |
15874582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 26 - 484
Target Start/End: Original strand, 14060540 - 14060998
Alignment:
| Q |
26 |
ggtcaaatttaagatttagggcttccgggcattggtcatcaacattttccataaagtgtagcaaagaacatccatccacaaacaatatccaagcaagatc |
125 |
Q |
| |
|
||||||| ||||||||||| |||| || |||||||||| |||||| |||| || |||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
14060540 |
ggtcaaacttaagatttagcccttcgggatattggtcatcgacatttcccatgaaatgtagcaaggaacatccatccacgaacaatatccaagcaagatc |
14060639 |
T |
|
| Q |
126 |
attatcattgtagccttcaattgcatcctcagtgaacatattcttcaattcttcaatattatcttcaatctttttaagcaaaagcttacatgcttcgcta |
225 |
Q |
| |
|
||| |||||| | |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||| | || |
|
|
| T |
14060640 |
attgtcattgaatccttcaattgcatcttcagtgaacatgttcttcaattcttcaatattatcttcaatcttgttaagcaaaagtttgcatgcttggtta |
14060739 |
T |
|
| Q |
226 |
tcatctttatcaannnnnnngccataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagatttttagcattgtgatgaa |
325 |
Q |
| |
|
|||||| || | |||||| | ||| |||| | || ||||||||||| ||||| |||||||||||||| ||| |||| ||||||||| | |
|
|
| T |
14060740 |
ccatcttgattgatttctttgccatattcctcaagaaatgtagaggtccatagaagtttgtactgctctccttctttaagacatttattattgtgatgga |
14060839 |
T |
|
| Q |
326 |
taggaccaaatgatataatctttggtgtacaatacttataaaatctttcattttgccgcaaaaacattggaaccctttggatcttaggaatcaaaatttg |
425 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||||| |||||| |
|
|
| T |
14060840 |
tcggaccaaatgatataatctttggtgagcaatacttataaaatctttcattttgtcgcaaaaacttaggaaccctttgaatcttaggaattgaaatttt |
14060939 |
T |
|
| Q |
426 |
attatttcgatcaaacctctgttgtgcctctttgagttgcaaaaaccttttatccataa |
484 |
Q |
| |
|
| ||||| | |||||| || ||||||||||||| ||||| ||| |||||||||||||| |
|
|
| T |
14060940 |
actattttgctcaaacttcagttgtgcctcttttagttgggaaatccttttatccataa |
14060998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 28 - 480
Target Start/End: Original strand, 14049171 - 14049609
Alignment:
| Q |
28 |
tcaaatttaagatttagggcttccgggcattggtcatcaacattttccataaagtgtagcaaagaacatccatccacaaacaatatccaagcaagatcat |
127 |
Q |
| |
|
||||| ||||||||||| |||| || |||||||||| |||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||| | |
|
|
| T |
14049171 |
tcaaacttaagatttagcccttcaggatattggtcatcgacattttccataaaatgcagcaaggaacatccatccacgaacaatatccaagcaagatcgt |
14049270 |
T |
|
| Q |
128 |
tatcattgtagccttcaattgcatcctcagtgaacatattcttcaattcttcaatattatcttcaatctttttaagcaaaagcttacatgcttcgctatc |
227 |
Q |
| |
|
| |||||| | |||||||||||||| || |||||||| |||||||||||| ||||||||||||||||||| ||||||||||| || || |||| | | |
|
|
| T |
14049271 |
tgtcattgaatccttcaattgcatcttccgtgaacatgttcttcaattctacaatattatcttcaatcttgttaagcaaaagtttgcaggcttggtggcc |
14049370 |
T |
|
| Q |
228 |
atctttatcaannnnnnngccataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagatttttagcattgtgatgaata |
327 |
Q |
| |
|
||||| || | |||||| | |||||||| | |||||||| |||||||||||||||||||||||||| ||| || | ||||||||| || |
|
|
| T |
14049371 |
atcttgattgatttgtttgccatattcctcaacaaatgtagatgtccacagaagcttgtaatgctctccttctttaagacattcactattgtgatggatg |
14049470 |
T |
|
| Q |
328 |
ggaccaaatgatataatctttggtgtacaatacttataaaatctttcattttgccgcaaaaacattggaaccctttggatcttaggaatcaaaatttgat |
427 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
14049471 |
ggaccaaatgagat--------------aatacttataaaatctttcattttgtctcaaaaactttggaaccctttggatcttaggaattgaaatttgac |
14049556 |
T |
|
| Q |
428 |
tatttcgatcaaacctctgttgtgcctctttgagttgcaaaaaccttttatcc |
480 |
Q |
| |
|
||||| | |||||| | ||||| ||||||| ||||| ||| |||||||||| |
|
|
| T |
14049557 |
tattttgctcaaactttagttgtacctcttttagttgggaaagccttttatcc |
14049609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 116
Target Start/End: Complemental strand, 21785738 - 21785704
Alignment:
| Q |
82 |
tgtagcaaagaacatccatccacaaacaatatcca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21785738 |
tgtagcaaagaacatccatccacaaacaacatcca |
21785704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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