View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16225_low_4 (Length: 471)
Name: NF16225_low_4
Description: NF16225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16225_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 21 - 467
Target Start/End: Original strand, 19856096 - 19856542
Alignment:
| Q |
21 |
aagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcctcattcataaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19856096 |
aagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcctcattcataaa |
19856195 |
T |
|
| Q |
121 |
cctctctggcttaaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttcggaatatgcttg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19856196 |
cctctctggcttaaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttcggaatatgcttg |
19856295 |
T |
|
| Q |
221 |
tcaccaaccataacatcatgaacagctaaacgtgcccatgataaaagtggtcctggtggatgcactcttaatgcttccttcacaatgcattgcaagtaac |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
19856296 |
tcaccaaccataacatcatgaacagctaaacgtgcccatgataaaagtggtcctggtggatgcactcttaatgcttccttcacaatgcactgtaagtaac |
19856395 |
T |
|
| Q |
321 |
acattttttgaacatcagcatcattgataactttggaatttccaacaacacggtaaatttcttcttgtacttttgcttgtatctctggatgaagcaccat |
420 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19856396 |
acattttttgaacatcagcatcagtgataactttggaatttccaacaacacggtaaatttcttcttgtgcttttgcttgtatctctggatgaagcaccat |
19856495 |
T |
|
| Q |
421 |
tctagccaaaatccattctagtaatattgctactgtctctgctcctc |
467 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
19856496 |
cctagccagaatccattctagtaatattgctactgtgtctgttcctc |
19856542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 8748541 - 8748312
Alignment:
| Q |
21 |
aagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcctcattcataaa |
120 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8748541 |
aagccaaatccatagcttttccaggacaaaccctcctaccagctccaaatg-tgctaacgtcaaatcagatcccattatactcacttcctcattcataaa |
8748443 |
T |
|
| Q |
121 |
cctctctggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttcggaatatgct |
218 |
Q |
| |
|
|||||||||||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8748442 |
cctctctggcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttataacccacatattcaccatagcagttgtacctttcggaacatgct |
8748343 |
T |
|
| Q |
219 |
tgtcaccaaccataacatcatgaacagctaa |
249 |
Q |
| |
|
| ||||| ||||||||||||||||||||||| |
|
|
| T |
8748342 |
tctcacctaccataacatcatgaacagctaa |
8748312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 32830292 - 32830523
Alignment:
| Q |
21 |
aagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcctcattcataaa |
120 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| |||||||||||||| |
|
|
| T |
32830292 |
aagccaaatccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacgtcaaatcatatcccattgtactcacttcctcattcataaa |
32830391 |
T |
|
| Q |
121 |
cctctctggc--ttaaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttcggaatatgct |
218 |
Q |
| |
|
|||||||||| |||||||||| || ||||| | |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
32830392 |
cctctctggcttttaaactcttttgcctcattgtaaaccttctcatcatgtgttatagcccacatattcaccataccagttgtacctttcggaacatgct |
32830491 |
T |
|
| Q |
219 |
tgtcaccaaccataacatcatgaacagctaaa |
250 |
Q |
| |
|
| ||||| |||||||||||||||||||||||| |
|
|
| T |
32830492 |
tctcacctaccataacatcatgaacagctaaa |
32830523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 35081130 - 35080901
Alignment:
| Q |
21 |
aagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcctcattcataaa |
120 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35081130 |
aagccaaatccatagcttttccaggacaaaccctcctaccagctccaaatg-tgctaacgtcaaatcagatcccattatactcacttcctcattcataaa |
35081032 |
T |
|
| Q |
121 |
cctctctggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttcggaatatgct |
218 |
Q |
| |
|
||||||| |||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35081031 |
cctctctcgcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttataacccacatattcaccatagcagttgtacctttcggaacatgct |
35080932 |
T |
|
| Q |
219 |
tgtcaccaaccataacatcatgaacagctaa |
249 |
Q |
| |
|
| ||||| ||||||||||||||||||||||| |
|
|
| T |
35080931 |
tctcacctaccataacatcatgaacagctaa |
35080901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 95 - 252
Target Start/End: Original strand, 39427880 - 39428039
Alignment:
| Q |
95 |
attatactcacatcctcattcataaacctctctggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccat |
192 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
39427880 |
attatactcacttcctcattcataaacctctctggcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttatagcccatatattcaccat |
39427979 |
T |
|
| Q |
193 |
agcagttgtacctttcggaatatgcttgtcaccaaccataacatcatgaacagctaaacg |
252 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| |||||||||||||||||| ||||||| |
|
|
| T |
39427980 |
agcagttgtacctttcggaacatgcttctcacctaccataacatcatgaacaactaaacg |
39428039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University