View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16225_low_5 (Length: 455)
Name: NF16225_low_5
Description: NF16225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16225_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 2725565 - 2725992
Alignment:
| Q |
18 |
gtacttacgcacaaatagcatgtccaacttcatggtaagccaccaaaattttgctcttgccatctgtcatcgcggttccttccatgcctgcgacaattcg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2725565 |
gtacttacgcacaaatagcatgtccaacttcatggtaagccaccaaaattttgcacttgccatctgtcatcgtggttccttccatgcctgcgacaattcg |
2725664 |
T |
|
| Q |
118 |
atcaatagagtcgtcgatttctttcattgtgatcttctctttttgccttcgaccggctagaatggctgcttcattcatgaggtttgccaggtccgcaccg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2725665 |
atcaatagagtcgtcgatttctttcattgtgatcttctctttttgccttcgaccagctagaatggctgcttcattcatgaggtttgccaggtccgcaccg |
2725764 |
T |
|
| Q |
218 |
ctgaatcctggagttctcatggcaatgacaccgagtgagatatctttgtcaagcttcttgttgttactatgaactttcaatatttcttccctccctctaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2725765 |
ctgaatcctggagttctcatggcaatgacaccgagtgagatatctttgtcaagcttcttgttgttactatgaactttcaatatttcttccctccctctaa |
2725864 |
T |
|
| Q |
318 |
tgtctggtaatccaacagttacctattgtaacaatcacaaaattattgttagaatagtaaatgcggttctaaagtaagaagataaacacatgagaatata |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | |
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| T |
2725865 |
tgtctggtaatccaacagttacctattgtaacaatcacaaaattattgttagaatagtaaatgcggttctaaagtaagaagatgaacacacgagaataaa |
2725964 |
T |
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| Q |
418 |
aggattgatcttgagttcgacgcctatg |
445 |
Q |
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| T |
2725965 |
aggattgatcttgagttcgacgcctatg |
2725992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 38679554 - 38679674
Alignment:
| Q |
21 |
cttacgcacaaatagcatgtccaacttcatggtaagccaccaaaattttgctcttgccatctgtcatcgcggttccttccatgcctgcgacaattcgatc |
120 |
Q |
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||||| ||||||| ||||| ||||||||||| || ||||| ||| |||||||||| ||||| ||||| ||||||||||| || |||||||| | ||| |
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| T |
38679554 |
cttacccacaaatggcatgcccaacttcatgatatgccactaaacttttgctcttcccatcggtcattaatgttccttccattccagcgacaatcctatc |
38679653 |
T |
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| Q |
121 |
aatagagtcgtcgatttcttt |
141 |
Q |
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|||||| ||||| || ||||| |
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| T |
38679654 |
aatagaatcgtcaatctcttt |
38679674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 15380343 - 15380246
Alignment:
| Q |
29 |
caaatagcatgtccaacttcatggtaagccaccaaaattttgctcttgccatctgtcatcgcggttccttccatgcctgcgacaattcgatcaataga |
126 |
Q |
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||||| ||||| ||||||||||| || ||||| ||| |||||||||| || ||||||||| |||| |||||||| || || ||||| | ||||||||| |
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| T |
15380343 |
caaatggcatgcccaacttcatgatatgccactaaacttttgctcttcccgtctgtcatcacggtaccttccattccagccacaatcctatcaataga |
15380246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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