View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16225_low_6 (Length: 387)
Name: NF16225_low_6
Description: NF16225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16225_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 259 - 380
Target Start/End: Complemental strand, 39259728 - 39259606
Alignment:
| Q |
259 |
agcattgcattggaattgacggaaaaacaaattttggaattctctaccatactctgaatattgaaagagagacgattaagtgaccaaattttattgttta |
358 |
Q |
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| T |
39259728 |
agcattgcattggaattaacggaaaaacaaattttggaattctctaccatactctaaatattgaaagagagacgattaagtgaccaaatttcattgttta |
39259629 |
T |
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| Q |
359 |
-gacacataaaattatgatgatg |
380 |
Q |
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| T |
39259628 |
tgacacataaaattatgatgatg |
39259606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 36 - 249
Target Start/End: Complemental strand, 39260002 - 39259779
Alignment:
| Q |
36 |
taacatttacctttaaagatttatttgaaactttatttaaaagcatacaataataacgaagtaacaatgttaccctgaa-----------taacttttaa |
124 |
Q |
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| T |
39260002 |
taacatttacctctaaagatttatttgaaactttatttaaaagcatacaatattaacgaagtgacaatgatacgctgaaaaattattgtttaacttttaa |
39259903 |
T |
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| Q |
125 |
aagatgaatatacaattttcaaaatgaatattgctatgttaattcttnnnnnnnnnnnnnnnnnttgctatgttaacttcattaacatat---gtcgtaa |
221 |
Q |
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| T |
39259902 |
aagatgaatgtaaaatttttaaaatgaatattgctatgttaattctt----aaaaaaaaaaatattgctatgttaacttcattaacatatgtcgtcgtaa |
39259807 |
T |
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| Q |
222 |
agacaaatgttaacatttacttaagaat |
249 |
Q |
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| T |
39259806 |
agacaaatgttaacatttacttaagaat |
39259779 |
T |
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