View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16225_low_7 (Length: 295)
Name: NF16225_low_7
Description: NF16225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16225_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 6 - 284
Target Start/End: Complemental strand, 39458108 - 39457829
Alignment:
| Q |
6 |
ttcttcacttccggtgttgctttccttggtttgaa-tcttcatattcataatatgtttgaacgagacaatgttgattccactcagttgctgcagcagact |
104 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39458108 |
ttcttcacttccggtgttgctttccttggtttgaaatcttcatattcataatatgtttgaacgagacaacgttgattccactcagttgctgcagcagact |
39458009 |
T |
|
| Q |
105 |
gagttggccatcccaagtttcgctaactcagttccttcaaacactttgcccagttcagtgctatgcaaggaatgggagtccttcttcatgagctatgcga |
204 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39458008 |
gagttggccatccgaggtttcgctaactcagttccttcaaacactttgcccagttcagtgctacgcaaggaatgggagtccttcttcatgagctatgcga |
39457909 |
T |
|
| Q |
205 |
aaggtctcaagaatgctgatgccattattgtaaattcatttgaagagctagaatcctatgccgttcactcctttgtctct |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39457908 |
aaggtctcaagaatgctgatgccattattgtaaattcatttgaagagctagaatcctatgccgttcactcctttgtctct |
39457829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 39464374 - 39464104
Alignment:
| Q |
1 |
ttgtgttcttcacttccggtgttgctttccttggtttgaatcttcatattcataatatgtttgaacgagacaatgttgattccactcagttgctgcagca |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| | | |||||||||||||||| || ||||| |||||| || ||| | |
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| T |
39464374 |
ttgtgttcttcacttcgagtgttgctttccttggtttgaatcttcatattcacactttgtttgaacgagacaacgtcgattcaactcagctggagcaact |
39464275 |
T |
|
| Q |
101 |
gactgagttggccatcccaagtttcgctaactcagttccttcaaacactttgcccagttcagtgctatgcaaggaatgggagtccttcttcatgagctat |
200 |
Q |
| |
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|||||| ||| || |||| |||||||||||||| |||||| |||| | ||||||||| |||| || ||||||||| ||||| || |||||||||||| |
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| T |
39464274 |
gactgaattgtccctcccgagtttcgctaactccgttcctacaaaatcgttgcccagtgcagtaatacgcaaggaatccgagtcgtttttcatgagctat |
39464175 |
T |
|
| Q |
201 |
gcgaaaggtctcaagaatgctgatgccattattgtaaattcatttgaagagctagaatcctatgccgttca |
271 |
Q |
| |
|
|| ||||| |||||||| ||||||| |||| ||||||||||||||||||||||||||| |||| ||||| |
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|
| T |
39464174 |
gcaaaaggcctcaagaaggctgatggttttatagtaaattcatttgaagagctagaatcccatgcagttca |
39464104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 39470576 - 39470293
Alignment:
| Q |
1 |
ttgtgttcttcacttccggtgttgctttccttggtttgaatcttcatattcataatatgtttgaacgagacaatgttgattccactcagttgctgcagca |
100 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||| ||||||| || ||||||||||||||| ||||| ||||||||| |||| | |
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|
| T |
39470576 |
ttgtgttgttcacttccggcattgctttccttggtttgaatctctatattcaatatctgtttgaacgagacagcaccgattcgactcagttgatgcaact |
39470477 |
T |
|
| Q |
101 |
gactgagttggccatcccaagtttcgctaactcagttccttcaaacactttgcccagttcagtgctatgcaaggaatgggagtccttcttcatgagctat |
200 |
Q |
| |
|
|| ||| || |||| || ||||| ||||| | |||||| |||| | |||||||||||||||||| |||||||| | ||| |||||||||||| |
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| T |
39470476 |
cacagagctgcccattccgagttttgctaatccgtttcctttaaactcgttgcccagttcagtgctacacaaggaatacaaatccgtcttcatgagcttc |
39470377 |
T |
|
| Q |
201 |
gcgaaaggtctcaagaatgctgatgccattattgtaaattcatttgaagagctagaatcctatgccgttcactcctttgtctct |
284 |
Q |
| |
|
|| ||||| ||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||| |
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|
| T |
39470376 |
gccaaaggcctcaagaatgccgatggcattattgtcaattcatttgaagagctagaatcctatgcggttcactcctttttctct |
39470293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 6 - 278
Target Start/End: Original strand, 39451361 - 39451633
Alignment:
| Q |
6 |
ttcttcacttccggtgttgctttccttggtttgaatcttcatattcataatatgtttgaacgagacaatgttgattccactcagttgctgcagcagactg |
105 |
Q |
| |
|
||||||||||| || ||||||| |||||||||||||||||||||||||| | |||||||||||| |||||||| |||||||||| |||||||| | |
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|
| T |
39451361 |
ttcttcacttctggcgttgcttcccttggtttgaatcttcatattcataccctccgtgaacgagacaacgttgattcaactcagttgcagcagcagaaag |
39451460 |
T |
|
| Q |
106 |
agttggccatcccaagtttcgctaactcagttccttcaaacactttgcccagttcagtgctatgcaaggaatgggagtccttcttcatgagctatgcgaa |
205 |
Q |
| |
|
|||| |||||||| | ||||||| ||| ||||||||| | | ||||| |||| || ||| ||||||||||||| | || |||||||||| | |
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| T |
39451461 |
agttagccatcccgactttcgctcacttgtttccttcaagctcattgcctggttccgtcctaagcaaggaatgggaaccgtttttcatgagcttcataga |
39451560 |
T |
|
| Q |
206 |
aggtctcaagaatgctgatgccattattgtaaattcatttgaagagctagaatcctatgccgttcactccttt |
278 |
Q |
| |
|
||| ||||||||||| |||| |||||| |||||||||||||||||||||||||| | || |||||||||||| |
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|
| T |
39451561 |
aggcctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcacacgcggttcactccttt |
39451633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 39460603 - 39460886
Alignment:
| Q |
1 |
ttgtgttcttcacttccggtgttgctttccttggtttgaatcttcatattcataatatgtttgaacgagacaatgttgattccactcagttgctgcagca |
100 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||| ||||||||||| || | | | |||| ||||||| || ||||| | |||||||| |||||| |
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| T |
39460603 |
ttgtcttcttcacttccggtgttgcttcccttggttcaaatcttcatatccacactcttcgtgaaagagacaacgtagattcaaatcagttgcagcagca |
39460702 |
T |
|
| Q |
101 |
gactgagttggccatcccaagtttcgctaactcagttccttcaaacactttgcccagttcagtgctatgcaaggaatgggagtccttcttcatgagctat |
200 |
Q |
| |
|
|||||| |||||||| |||| |||||| ||||| |||||| | || | |||||||||| ||||| |||||||||||| ||||| || |||| |||| |
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|
| T |
39460703 |
gactgaattggccataccaactttcgccaactcggttcctatatactcgctgcccagttccatgctaaacaaggaatgggaatccttttttatgaactat |
39460802 |
T |
|
| Q |
201 |
gcgaaaggtctcaagaatgctgatgccattattgtaaattcatttgaagagctagaatcctatgccgttcactcctttgtctct |
284 |
Q |
| |
|
|| || |||||||| || ||| ||||| ||||||||||||||||||||||||||| |||| ||||| || ||| ||||| |
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|
| T |
39460803 |
gctggtggcctcaagaaagcaaatggtattatagtaaattcatttgaagagctagaatcccatgcagttcaatcatttttctct |
39460886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 284
Target Start/End: Original strand, 39475867 - 39476145
Alignment:
| Q |
6 |
ttcttcacttccggtgttgctttccttggtttgaatcttcatattcataatatgtttgaacgagacaatgttgattccactcagttgctgcagcagactg |
105 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| | || | | | | ||||||||||||||| ||||| |||||| |||||| ||||| | |
|
|
| T |
39475867 |
ttcttcacttctggtgttgcttcccttggtttgaatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctgctgctgcagaacg |
39475966 |
T |
|
| Q |
106 |
agttggccatcccaagtttcgctaactcagttccttcaaacactttgcccagttcagtgctatgcaaggaatgggagtccttcttcatgagctatgcgaa |
205 |
Q |
| |
|
|| | |||||||| |||||||| ||| | ||||||||||| | |||||||||| |||||| ||||||||||||||| || |||||||| ||| | |
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|
| T |
39475967 |
aggtagccatcccgagtttcgccaaccccgttccttcaaaatcattgcccagttttgtgctacacaaggaatgggagtcgtttttcatgagacttgcaag |
39476066 |
T |
|
| Q |
206 |
aggtctcaagaatgctgatgccattattgtaaattcatttgaagagctagaatcctatgccgttcactcctttgtctct |
284 |
Q |
| |
|
||| |||||||| | ||| |||||| ||||| |||||||||||||||||||| |||| |||||||| ||| ||||| |
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|
| T |
39476067 |
aggcctcaagaaagtaaatggcattatagtaaactcatttgaagagctagaatcacatgcggttcactcttttttctct |
39476145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 39472386 - 39472659
Alignment:
| Q |
1 |
ttgtgttcttcacttccggtgttgctttccttggtttgaatcttcatattcataatatgtttgaacgagacaatgttgattccactcagttgctgcagca |
100 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| |||| | ||||| || | | | | | ||||||||||||| |||| ||| ||||| | || | |
|
|
| T |
39472386 |
ttgtcttcttcacttccggtgttgcgttccttggattgagttttcatctttacactcttcgtcaacgagacaatgtctattcaactaagttgttacaact |
39472485 |
T |
|
| Q |
101 |
gactgagttggccatcccaagtttcgctaactcagttccttcaaacactttgcccagttcagtgctatgcaaggaatgggagtccttcttcatgagctat |
200 |
Q |
| |
|
||||| ||||| |||| ||||||||||||| ||||| |||| | ||||||||| | |||||| |||| ||||||||||| || | ||| ||||| |
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|
| T |
39472486 |
cactgacttggctgtcccgagtttcgctaacttggttccaacaaaagcattgcccagtgctgtgctaagcaaagaatgggagtcgtttatgatgggctat |
39472585 |
T |
|
| Q |
201 |
gcgaaaggtctcaagaatgctgatgccattattgtaaattcatttgaagagctagaatcctatgccgttcactc |
274 |
Q |
| |
|
|||||| |||||||| ||||||| | |||| ||||||||||||||||||||||||||| | || |||||||| |
|
|
| T |
39472586 |
tggaaaggcctcaagaacgctgatggctttatagtaaattcatttgaagagctagaatcccacgcagttcactc |
39472659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 6 - 284
Target Start/End: Original strand, 39486826 - 39487104
Alignment:
| Q |
6 |
ttcttcacttccggtgttgctttccttggtttgaatcttcatattcataatatgtttgaacgagacaatgttgattccactcagttgctgcagcagactg |
105 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| || ||| |||| | | |||||||||||||||| | ||||| ||||||||||||||||||| | |
|
|
| T |
39486826 |
ttcttcacttccggtgttgcttttcttggtttgatgctccatcttcacactctgtttgaacgagacaacatcgattcaactcagttgctgcagcagaacg |
39486925 |
T |
|
| Q |
106 |
agttggccatcccaagtttcgctaactcagttccttcaaacactttgcccagttcagtgctatgcaaggaatgggagtccttcttcatgagctatgcgaa |
205 |
Q |
| |
|
|| | |||||||||||||| || ||||| |||| ||| | |||||||||| ||||| |||||||| || || || ||||||| || ||| |
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|
| T |
39486926 |
aggtagccatcccaagttttgccaactcgattccaattaactcgttgcccagtttcctgctacacaaggaatatgaatcgtttttcatgaactttgccgg |
39487025 |
T |
|
| Q |
206 |
aggtctcaagaatgctgatgccattattgtaaattcatttgaagagctagaatcctatgccgttcactcctttgtctct |
284 |
Q |
| |
|
|| |||| || || |||||||||| |||||||||||||||||| ||||||| |||| ||||| |||||| ||||| |
|
|
| T |
39487026 |
tggcatcaaaaaagcaaatgccattatagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctct |
39487104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 284
Target Start/End: Original strand, 39454994 - 39455266
Alignment:
| Q |
6 |
ttcttcacttccggtgttgctttccttggtttgaatcttcatattcataatatgtttgaacgagacaatgttgattccactcagttgctgcagcagactg |
105 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| ||| || |||| ||||||||||||| || | ||||| ||||||||||||||||||| | |
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|
| T |
39454994 |
ttcttcacttccagtgtagctttccttggtttgactctctatcttcacaatatgtttgaacaag------tagattcaactcagttgctgcagcagaacg |
39455087 |
T |
|
| Q |
106 |
agttggccatcccaagtttcgctaactcagttccttcaaacactttgcccagttcagtgctatgcaaggaatgggagtccttcttcatgagctatgcgaa |
205 |
Q |
| |
|
|||| ||||| || | |||| | || | ||||||||||| | ||||| |||| ||||| ||||||||||| | | | |||| ||||||||| | |
|
|
| T |
39455088 |
agttagccattccgactttcaccaatttgtttccttcaaactcattgccacgttccctgctaagcaaggaatggaaaccggttttcaagagctatgcaag |
39455187 |
T |
|
| Q |
206 |
aggtctcaagaatgctgatgccattattgtaaattcatttgaagagctagaatcctatgccgttcactcctttgtctct |
284 |
Q |
| |
|
||| ||||||||||| |||| || || ||||||||||||||||| || ||||| |||| |||||||||||| ||||| |
|
|
| T |
39455188 |
aggcctcaagaatgccgatggaatcatagtaaattcatttgaagatcttgaatctcatgcggttcactcctttttctct |
39455266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 43312346 - 43312302
Alignment:
| Q |
8 |
cttcacttccggtgttgctttccttggtttgaatcttcatattca |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
43312346 |
cttcacttccggtgttgctttccttggtttgatgcttcattttca |
43312302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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