View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16225_low_8 (Length: 267)
Name: NF16225_low_8
Description: NF16225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16225_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 9674682 - 9674865
Alignment:
| Q |
65 |
gtgcattctacatgttacatcattttttaattgcaagattggnnnnnnngcaaacatgaaacatgttgcatggttcccctagagattaaggaact----- |
159 |
Q |
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| T |
9674682 |
gtgcattctacatattacaacattttttaattgcaagattggaaaaaa-gcaaacatgaaacatgttgcatggttctcctggagattaaggaactagaaa |
9674780 |
T |
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| Q |
160 |
-------tcatactcgaaagctccaat-----------gacagactccatctgttttgttactctcatcaatccaaactttcaac |
226 |
Q |
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| T |
9674781 |
gagtgcatcatacacaaaagctccaattcaacaaattggacagactccatctgttttgttcctctcatcaatccaaactttcaac |
9674865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 9686985 - 9687046
Alignment:
| Q |
181 |
acagactccatctgttttgtta---ctctcatcaatccaaactttcaacacagctttcctat |
239 |
Q |
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| T |
9686985 |
acagactccatctgtattgttgttcctctcatcaatccaaactttcaacacagctttcctat |
9687046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 9688770 - 9688808
Alignment:
| Q |
188 |
ccatctgttttgttactctcatcaatccaaactttcaac |
226 |
Q |
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| T |
9688770 |
ccatctgttttgttcctctcatcagtccaaactttcaac |
9688808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 9684719 - 9684775
Alignment:
| Q |
183 |
agactccatctgttttgttactctcatcaatccaaactttcaacacagctttcctat |
239 |
Q |
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| T |
9684719 |
agaccccatctattttgttcctctcatcaacccacactttcaacgtagctttcctat |
9684775 |
T |
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