View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16226_high_3 (Length: 552)
Name: NF16226_high_3
Description: NF16226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16226_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 8e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 344 - 487
Target Start/End: Complemental strand, 17819486 - 17819345
Alignment:
| Q |
344 |
gtaacatatatgaatgaatataaaagttgacaagacaactctcattgatatctatagtcttc---ataaaaaacaaagttatttgatgacattttcaaga |
440 |
Q |
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| T |
17819486 |
gtaacatatatgaatgaatataaaagttgacaa-----ctctccttgatatctatagtcttcttcataaaaaacaaagttatttgatgacatttacaaga |
17819392 |
T |
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| Q |
441 |
acaacttgccaagatactacctctttctacagactagaataatacat |
487 |
Q |
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| T |
17819391 |
acaacttgccaagatactacctctttctaaagactagaataatacat |
17819345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 17819878 - 17819772
Alignment:
| Q |
85 |
gtgttactgtgatttcatcaaactcacctgtcattcgagaatacaca--acctatatactaaatatttgctcctacattcaaactaggaacactactgca |
182 |
Q |
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| T |
17819878 |
gtgttactgtgatttcatcaaactcacccgtcatttgagaatatacataacctatgtactgaatctttgctcctacattcaaactaggtacactactgca |
17819779 |
T |
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| Q |
183 |
tttacgc |
189 |
Q |
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| T |
17819778 |
tttacgc |
17819772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 471 - 543
Target Start/End: Complemental strand, 17819331 - 17819260
Alignment:
| Q |
471 |
agactagaataatacatatccaaagaagcatatgannnnnnnnattattgtttatatttttagttagtataat |
543 |
Q |
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| T |
17819331 |
agactagaataatacatatccaaagaagcatatga-tttttttattattttttatatttttagttagtataat |
17819260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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