View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16226_high_4 (Length: 551)
Name: NF16226_high_4
Description: NF16226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16226_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 20 - 448
Target Start/End: Complemental strand, 47286127 - 47285699
Alignment:
| Q |
20 |
gcaagtgtatacaatgtttgaaaactagaaaaatttgccacttttgttccaaacttcttgtcacctccaccattcaccgcctctaccgcggcagcgttca |
119 |
Q |
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| T |
47286127 |
gcaagtgtatacaatgtttgaaaactagaaaaatttgccacttttgttccaaacttcttgtcacctccaccattcaccgcctctaccgcggcagcgttca |
47286028 |
T |
|
| Q |
120 |
ttgtatccgctaaaagttgcatgaaccggttctgctccatcacagttccagtgttcatgagcgcaagcactggaacttctgcagctacgttgaagaatga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47286027 |
ttgtatccgctaaaagttgcatgaaccggttctgctccatcacagttccagtgttcatgagcgcaagcactggaacttctgcagctacgttgaagaatga |
47285928 |
T |
|
| Q |
220 |
aacgtttgagtaacgtatcatgcattcagctaaccaaataactgattcttttgctttaggacatttttgagggatttgattggatgctgcagaaacacag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47285927 |
aacgtttgagtaacgtatcatgcattcagctaaccaaataactgattcttttgctttaggacatttttgagggatttgattggatgctgcagaaacacag |
47285828 |
T |
|
| Q |
320 |
tctttgccttctttttgtgtttgatctccacggcagagaaaggcaccgtacacggtgtttacagggttgttggcgccaactgtggtgtagtagaaaccat |
419 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47285827 |
tctttgcattctttttgtgtgcgatctccacggcagagaaaggcaccgtacacggtgtttacggggttgttggcgccaactgtggtgtagtagaaaccat |
47285728 |
T |
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| Q |
420 |
ttttgtttgtggaattgggtgaaagaata |
448 |
Q |
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||||||||||||| |||| |||||||||| |
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| T |
47285727 |
ttttgtttgtggagttggatgaaagaata |
47285699 |
T |
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