View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16226_low_10 (Length: 345)

Name: NF16226_low_10
Description: NF16226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16226_low_10
NF16226_low_10
[»] chr1 (10 HSPs)
chr1 (1-180)||(13066917-13067098)
chr1 (157-330)||(13008652-13008825)
chr1 (28-182)||(30364925-30365078)
chr1 (156-289)||(13068798-13068931)
chr1 (27-182)||(30366761-30366919)
chr1 (39-99)||(13006228-13006288)
chr1 (32-86)||(13136341-13136395)
chr1 (32-86)||(13205842-13205896)
chr1 (32-86)||(13102535-13102589)
chr1 (32-86)||(13162909-13162963)
[»] chr6 (2 HSPs)
chr6 (1-92)||(31385047-31385138)
chr6 (147-182)||(31380123-31380158)


Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 13067098 - 13066917
Alignment:
Q  1 gtatgttttgacttgcaattgtctatgatgtatgcttataaaatgtgtacattctttacaattttatatcctttagtgcatgaagagaattaatcatttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13067098 gtatgttttgacttgcaattgtctatgatgtatgcttataaaatgtgtacatgctttacaattttatatcctttagtgcatgaagagaattaatcatttc 13066999  T
Q  101 acgccttgaagtgttgtactttctcacacttac--tatttcttagaatgtataaacacaaatgcaaacttaattgacttgct 180  Q
    ||||||||||||||||||||||| ||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  13066998 acgccttgaagtgttgtactttcccacgcttactatatttcttagaatgtataaacacaaatgcaaacttaattgacttgct 13066917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 157 - 330
Target Start/End: Original strand, 13008652 - 13008825
Alignment:
Q  157 aaatgcaaacttaattgacttgctttattctcttcagtgtggagaatgttaggtttatgacattttttaagattcaatcttaaaatagcaattagattta 256  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13008652 aaatgcaaacttaattgacttactttattctctttagtgtggagaatgttaggtttatgacattttttaagattcaatcttaaaatagcaattagattca 13008751  T
Q  257 gttagatgcatgacatttaagtaggtagttgaaggttggaatgatacagtgattcttagtttaatacagatggt 330  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13008752 attagatgcatgacatttaagtaggtagttgaaggttggaatgatacagtgatccttagtttaatacagatggt 13008825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 30365078 - 30364925
Alignment:
Q  28 atgtatgcttataaaatgtgtacattctttacaattttatatcctttagtgcatgaagagaattaatcatttcacgccttgaagtgttgtactttctcac 127  Q
    ||||||||||||||||||||||||| ||||||| |||||||  ||||||||||||  ||||||||| |||||||| |||||||||||||  |||||| ||    
T  30365078 atgtatgcttataaaatgtgtacatactttacacttttatagtctttagtgcatg--gagaattaaccatttcacaccttgaagtgttgccctttctgac 30364981  T
Q  128 acttactat-ttcttagaatgtataaacacaaatgcaaacttaattgacttgcttt 182  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30364980 gcttactatattcttagaatgtataaacacaaatgcaaacttaattgacttgcttt 30364925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 156 - 289
Target Start/End: Complemental strand, 13068931 - 13068798
Alignment:
Q  156 caaatgcaaacttaattgacttgctttattctcttcagtgtggagaatgttaggtttatgacattttttaagattcaatcttaaaatagcaattagattt 255  Q
    |||| |||||||||| | ||||||||||| ||| |||||||||||| |||||||| ||||||| ||||| ||||||||||||| || |  |||||||||     
T  13068931 caaacgcaaacttaacttacttgctttatcctcctcagtgtggagactgttaggtgtatgacagttttttagattcaatcttacaaaaaaaattagattc 13068832  T
Q  256 agttagatgcatgacatttaagtaggtagttgaa 289  Q
    |||||| |||||||||||||||||||||||||||    
T  13068831 agttaggtgcatgacatttaagtaggtagttgaa 13068798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 27 - 182
Target Start/End: Complemental strand, 30366919 - 30366761
Alignment:
Q  27 gatgtatgcttataaaatgtgtacattcttt-acaattttatatcctttagtgcatgaagagaattaatcatttcacgccttgaagtgttgtactttctc 125  Q
    |||||||||||||||||||||||||| |||| ||| ||||||| |||||||| ||||||||||||| | |||||||| || | |||||||| |||||  |    
T  30366919 gatgtatgcttataaaatgtgtacatgcttttacacttttatagcctttagttcatgaagagaatttaccatttcaccccattaagtgttgcacttttcc 30366820  T
Q  126 acacttacta--tttcttagaatgtataaacacaaatgcaaacttaattgacttgcttt 182  Q
    |  || ||||  ||||||| |||||||||||||| |||| |||||||||||||||||||    
T  30366819 aggctgactatctttcttaaaatgtataaacacagatgcgaacttaattgacttgcttt 30366761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 13006228 - 13006288
Alignment:
Q  39 taaaatgtgtacattctttacaattttatatcctttagtgcatgaagagaattaatcattt 99  Q
    |||||| ||||||| ||||||| || ||||| ||||||||||||||||||||||| |||||    
T  13006228 taaaatatgtacatgctttacacttatatattctttagtgcatgaagagaattaaccattt 13006288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 13136395 - 13136341
Alignment:
Q  32 atgcttataaaatgtgtacattctttacaattttatatcctttagtgcatgaaga 86  Q
    ||||||||||||||||||||| ||||||| || |||| |||||||||| ||||||    
T  13136395 atgcttataaaatgtgtacatgctttacacttatatagcctttagtgcgtgaaga 13136341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 13205842 - 13205896
Alignment:
Q  32 atgcttataaaatgtgtacattctttacaattttatatcctttagtgcatgaaga 86  Q
    ||||||||||||||||||||| ||||||| || |||| |||||||||| ||||||    
T  13205842 atgcttataaaatgtgtacatgctttacacttatatagcctttagtgcgtgaaga 13205896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 13102535 - 13102589
Alignment:
Q  32 atgcttataaaatgtgtacattctttacaattttatatcctttagtgcatgaaga 86  Q
    ||||||||||||||||||||| ||||||| || |||| |||||| ||| ||||||    
T  13102535 atgcttataaaatgtgtacatgctttacacttatatagcctttactgcgtgaaga 13102589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 13162909 - 13162963
Alignment:
Q  32 atgcttataaaatgtgtacattctttacaattttatatcctttagtgcatgaaga 86  Q
    |||||| |||||||||||||| ||||||| || |||| |||||||||| ||||||    
T  13162909 atgcttttaaaatgtgtacatgctttacacttatatagcctttagtgcgtgaaga 13162963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 31385138 - 31385047
Alignment:
Q  1 gtatgttttgacttgcaattgtctatgatgtatgcttataaaatgtgtacattctttacaattttatatcctttagtgcatgaagagaatta 92  Q
    ||||||||||| |||||  | | | ||||||||||||||||||| ||||||| ||||| | |||||||  ||||||||||||||||||||||    
T  31385138 gtatgttttgaattgcatgtttgtttgatgtatgcttataaaatatgtacatgctttatacttttatagtctttagtgcatgaagagaatta 31385047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 182
Target Start/End: Complemental strand, 31380158 - 31380123
Alignment:
Q  147 gtataaacacaaatgcaaacttaattgacttgcttt 182  Q
    |||||||||| |||||||||||||||||||||||||    
T  31380158 gtataaacactaatgcaaacttaattgacttgcttt 31380123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University