View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16226_low_11 (Length: 335)

Name: NF16226_low_11
Description: NF16226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16226_low_11
NF16226_low_11
[»] chr6 (1 HSPs)
chr6 (12-318)||(13610250-13610556)
[»] chr4 (2 HSPs)
chr4 (108-318)||(31246196-31246406)
chr4 (26-79)||(13610727-13610780)
[»] chr2 (3 HSPs)
chr2 (26-79)||(43325362-43325415)
chr2 (26-79)||(43317705-43317758)
chr2 (26-79)||(8861884-8861937)
[»] chr8 (1 HSPs)
chr8 (26-79)||(39317322-39317375)
[»] chr5 (4 HSPs)
chr5 (26-79)||(14197697-14197750)
chr5 (26-79)||(5711782-5711835)
chr5 (26-78)||(10365201-10365253)
chr5 (26-78)||(38477487-38477539)
[»] scaffold0122 (1 HSPs)
scaffold0122 (26-79)||(11654-11707)
[»] chr7 (3 HSPs)
chr7 (26-79)||(8227120-8227173)
chr7 (26-79)||(9626466-9626519)
chr7 (33-81)||(29722000-29722048)
[»] chr3 (1 HSPs)
chr3 (26-79)||(24912592-24912645)
[»] chr1 (3 HSPs)
chr1 (26-79)||(24029811-24029864)
chr1 (26-79)||(45931645-45931698)
chr1 (26-66)||(42824708-42824748)


Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 12 - 318
Target Start/End: Complemental strand, 13610556 - 13610250
Alignment:
Q  12 atgaactaacggactttttaatccatccattaaaattcaaatccatattcatccattccatccattttacccatactcgtaaccataggattgtagtacc 111  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13610556 atgaactaacggactttttaatccatccattagaattcaaatccatattcatccattccatccattttacccatactcgtaaccatatgattgtagtacc 13610457  T
Q  112 tttgttcccttccatagttgcctgatgttgctagaacgtaggatcaattcaacaagtttatccggctgaaaacttgatggcaaacatgtgaaaggatatt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13610456 tttgttcccttccatagttgcctgatgttgctagaacgtaggatcaattcaacaagtttatccggctgaaaacttgatggcaaacatgtgaaaggatatt 13610357  T
Q  212 tttcccaatatagataccccaattcacttgaaagaaaattgagacttcctgagaaattcaaatcacacagcttgagcaatttaaggcgagtcatctttgc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13610356 tttcccaatatagataccccaattcacttgaaagaaaattgagacttcctgagaaattcaaatcacgcagcttgagcaatttaaggcgagtcatctttgc 13610257  T
Q  312 taaagct 318  Q
    |||||||    
T  13610256 taaagct 13610250  T

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Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 108 - 318
Target Start/End: Complemental strand, 31246406 - 31246196
Alignment:
Q  108 tacctttgttcccttccatagttgcctgatgttgctagaacgtaggatcaattcaacaagtttatccggctgaaaacttgatggcaaacatgtgaaagga 207  Q
    ||||||||| |||| ||||||||||||||||||||||  | |||||| || ||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  31246406 tacctttgtgccctcccatagttgcctgatgttgctacgaggtaggaccagttcaacaagtttatccggctggaaacttgatggcaaacaagtgaaagga 31246307  T
Q  208 tatttttcccaatatagataccccaattcacttgaaagaaaattgagacttcctgagaaattcaaatcacacagcttgagcaatttaaggcgagtcatct 307  Q
    ||||| |||||| | ||||||||||| | ||| ||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| |||| |    
T  31246306 tatttatcccaacagagataccccaaatgactagaaagaaaattgagacttcctgagaaattcaaattccacagcatgagcaatttaaggcgactcattt 31246207  T
Q  308 ttgctaaagct 318  Q
     ||||||||||    
T  31246206 gtgctaaagct 31246196  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 13610727 - 13610780
Alignment:
Q  26 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 79  Q
    ||||| ||| ||||||||| || ||||||||||| |||||| ||||||||||||    
T  13610727 ttttttatcaatccattaagatccaaatccatatccatccaatccatccatttt 13610780  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 43325362 - 43325415
Alignment:
Q  26 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 79  Q
    ||||| |||||||||||| ||| |||||||||||||||||| ||||||||||||    
T  43325362 ttttttatccatccattagaatccaaatccatattcatccaatccatccatttt 43325415  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 43317758 - 43317705
Alignment:
Q  26 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 79  Q
    ||||| || |||||||||| || |||||||||||||||||| ||||||||||||    
T  43317758 tttttgattcatccattaagatccaaatccatattcatccaatccatccatttt 43317705  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 8861937 - 8861884
Alignment:
Q  26 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 79  Q
    ||||| |||||| |||||| || ||||||||||| |||||| ||||||||||||    
T  8861937 tttttgatccattcattaagatccaaatccatatccatccaatccatccatttt 8861884  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 39317375 - 39317322
Alignment:
Q  26 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 79  Q
    ||||| |||||||||||||||| ||||| ||||| |||||| ||||||||||||    
T  39317375 tttttgatccatccattaaaatccaaattcatatccatccaatccatccatttt 39317322  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 14197697 - 14197750
Alignment:
Q  26 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 79  Q
    ||||| ||||||||||||| || ||||||||||| |||||| ||||||||||||    
T  14197697 tttttgatccatccattaagatccaaatccatatccatccaatccatccatttt 14197750  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 5711782 - 5711835
Alignment:
Q  26 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 79  Q
    ||||| ||||||||||||  || ||||||||||| |||||| ||||||||||||    
T  5711782 tttttgatccatccattaggatccaaatccatatccatccaatccatccatttt 5711835  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 10365253 - 10365201
Alignment:
Q  26 tttttaatccatccattaaaattcaaatccatattcatccattccatccattt 78  Q
    ||||| ||||||||||||  || ||||||||||| |||||| |||||||||||    
T  10365253 tttttgatccatccattaggatccaaatccatatccatccaatccatccattt 10365201  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 38477539 - 38477487
Alignment:
Q  26 tttttaatccatccattaaaattcaaatccatattcatccattccatccattt 78  Q
    ||||| ||||||||||||  || ||||||||||| |||||| |||||||||||    
T  38477539 tttttgatccatccattaggatccaaatccatatccatccaatccatccattt 38477487  T

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Target: scaffold0122 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 11707 - 11654
Alignment:
Q  26 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 79  Q
    ||||| ||||||||||||  || |||||||||| ||||||| ||||||||||||    
T  11707 tttttgatccatccattaggatccaaatccataatcatccaatccatccatttt 11654  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 8227120 - 8227173
Alignment:
Q  26 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 79  Q
    ||||| ||||||||||||  || ||||||||||| |||||| ||||||||||||    
T  8227120 tttttgatccatccattaggatccaaatccatatccatccaatccatccatttt 8227173  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 9626519 - 9626466
Alignment:
Q  26 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 79  Q
    ||||| ||| ||||||||| || ||||||||||| |||||| ||||||||||||    
T  9626519 ttttttatcaatccattaagatccaaatccatatccatccaatccatccatttt 9626466  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 29722000 - 29722048
Alignment:
Q  33 tccatccattaaaattcaaatccatattcatccattccatccattttac 81  Q
    |||||||||||||||  |||||||||| ||| || ||||||||||||||    
T  29722000 tccatccattaaaatctaaatccatatccattcaatccatccattttac 29722048  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 24912592 - 24912645
Alignment:
Q  26 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 79  Q
    ||||||||| ||||||||  || ||||||||||| |||||| ||||||||||||    
T  24912592 tttttaatcgatccattaggatccaaatccatatccatccaatccatccatttt 24912645  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 24029811 - 24029864
Alignment:
Q  26 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 79  Q
    ||||| ||||||||||||  || ||||||||||| |||||| ||||||||||||    
T  24029811 tttttgatccatccattaggatccaaatccatatccatccaatccatccatttt 24029864  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 45931645 - 45931698
Alignment:
Q  26 tttttaatccatccattaaaattcaaatccatattcatccattccatccatttt 79  Q
    ||||| ||||||||||||  || ||||||||||| |||||| ||||||||||||    
T  45931645 tttttgatccatccattaggatccaaatccatatccatccaatccatccatttt 45931698  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 42824708 - 42824748
Alignment:
Q  26 tttttaatccatccattaaaattcaaatccatattcatcca 66  Q
    ||||| ||||||||||||||||  |||||||||||||||||    
T  42824708 tttttgatccatccattaaaatctaaatccatattcatcca 42824748  T

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