View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16226_low_2 (Length: 681)
Name: NF16226_low_2
Description: NF16226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16226_low_2 |
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| [»] chr4 (5 HSPs) |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 16 - 681
Target Start/End: Original strand, 31245675 - 31246339
Alignment:
| Q |
16 |
aaggaaagatattatggatgtacttcgaattagttttgatggattagatgatacggaaaaggacatctttctagatattgcatgtttcttttatgaaaaa |
115 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| || ||| |||||||||| |||||||||||| ||||| |
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| T |
31245675 |
aaggacagatattatggatgtacttcgaattagttttgatggactagaggatacagaaaaggatatatttttagatattgcttgtttcttttataaaaaa |
31245774 |
T |
|
| Q |
116 |
gaggagacgtatgtgaagagagttttagattttcgtggatttcatcctgaaattggtttaagagttctcattgataaatcattcataacttgtgagaagg |
215 |
Q |
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|||||| || ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| | |
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| T |
31245775 |
tcggagacatacgtgaataaagttttagattttcgtggatttcatcctgaaattggtttaagagttcttgttgataagtcattcataacctgtgagaacg |
31245874 |
T |
|
| Q |
216 |
ggagaatttttatgcatggtttgttcaaagaactaggcaagagtatcgttagagaaaaatcacccaaagagccaagaaagtggaacaggttgtgggacta |
315 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
31245875 |
ggagaatttttatgcatgatttgttcaaagaactaggcaagagtatcgttagggaaaaatcacccaaagaaccaagaaagtggaacaggatgtgggacta |
31245974 |
T |
|
| Q |
316 |
caaggatgtacacaatgttatctcagaatacatggtaaaatagttattgagatcaaattattgcttaccatttttctataatcgattaataactttaaag |
415 |
Q |
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||||||||| ||||||||||| |||||| ||||||||||||||||||| | || | ||||||||||||||||||||||| ||||||||||||| | |||| |
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| T |
31245975 |
caaggatgtccacaatgttatatcagaaaacatggtaaaatagttattaaaataagattattgcttaccatttttctat-atcgattaataacctcaaag |
31246073 |
T |
|
| Q |
416 |
tatttgtcattcttaatgtcatttgcgataatgtaggcaacaagcaaccttgaagccatagttctacggcgttacccagaaaatattgaagaaatacagg |
515 |
Q |
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||| | || || |||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
31246074 |
tatctatcgtttttaatgtcatttgcaatactgtaggcaacatcaaaccttgaagccatagttctgaggcgttatccagaaaatattgaagaaatacagg |
31246173 |
T |
|
| Q |
516 |
agatgacaacattgagggctgaagctttagcacaaatgggtcgccttaaattgctcatcctgtggaatttgaatttttcaggaaatctcaattttctttc |
615 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
31246174 |
ggatgacaacattgagaactgaagctttagcacaaatgagtcgccttaaattgctcatgctgtggaatttgaatttctcaggaagtctcaattttctttc |
31246273 |
T |
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| Q |
616 |
tagtcatttggggtatctctgttgggataaatatcctttcacttgtttgccatcaagttttcagcc |
681 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31246274 |
tagtcatttggggtatctctgttgggataaatatcctttcacttgtttgccatcaagtttccagcc |
31246339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 31477688 - 31477747
Alignment:
| Q |
137 |
gttttagattttcgtggatttcatcctgaaattggtttaagagttctcattgataaatca |
196 |
Q |
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|||||| ||| | ||||||||||| | || ||||| |||||||||||||||||||||||| |
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| T |
31477688 |
gttttaaattgttgtggatttcatgccgatattggattaagagttctcattgataaatca |
31477747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 31483545 - 31483604
Alignment:
| Q |
137 |
gttttagattttcgtggatttcatcctgaaattggtttaagagttctcattgataaatca |
196 |
Q |
| |
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|||||| ||| | |||||||||||||||| ||||| ||||||||||| ||||||||||| |
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| T |
31483545 |
gttttaaattgttgtggatttcatcctgatattggattaagagttcttgttgataaatca |
31483604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 31502824 - 31502870
Alignment:
| Q |
150 |
gtggatttcatcctgaaattggtttaagagttctcattgataaatca |
196 |
Q |
| |
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||||||||||| |||| || || |||||||||||||||||||||||| |
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| T |
31502824 |
gtggatttcatgctgatataggattaagagttctcattgataaatca |
31502870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 31527753 - 31527707
Alignment:
| Q |
150 |
gtggatttcatcctgaaattggtttaagagttctcattgataaatca |
196 |
Q |
| |
|
||||||||||| |||| ||||| ||||||||||||||||| |||||| |
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|
| T |
31527753 |
gtggatttcatgctgatattggattaagagttctcattgacaaatca |
31527707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 26 - 681
Target Start/End: Original strand, 13609736 - 13610393
Alignment:
| Q |
26 |
attatggatgtacttcgaattagttttgatggattagatgatacggaaaaggacatctttctagatattgcatgtttcttttatgaaaaagag-gagacg |
124 |
Q |
| |
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|||||||||||||| || |||||| ||||||| || | |||| |||||||| || ||||| |||||||| ||||||||| || | | |||| ||||| |
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| T |
13609736 |
attatggatgtactacggcttagttatgatggactaaaggatatagaaaaggagatttttctggatattgcttgtttctttgat-agagagagcgagaca |
13609834 |
T |
|
| Q |
125 |
tatgtgaagagagttttagattttcgtggatttcatcctgaaattggtttaagagttctcattgataaatcattcataacttgtgagaagggg---agaa |
221 |
Q |
| |
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|| ||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| ||||| | || || | | | |
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|
| T |
13609835 |
tacgtgaagaaagttttagattttcgtggatttcatcccgaaattggcttaagagttctctttgataaatcattaataacctatgggaggttttctacga |
13609934 |
T |
|
| Q |
222 |
tttttatgcatggtttgttcaaagaactaggcaagagtatcgttagagaaaaatcacccaaagagccaagaaagtggaacaggttgtgggactacaagga |
321 |
Q |
| |
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||| ||||||| ||||||| |||||||| |||| ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
13609935 |
tttctatgcatcgtttgttaaaagaacttggcaggagtatcattaaagaaaaatcacccaaagaaccaagaaagtggaacaggttgtgggaccacaagga |
13610034 |
T |
|
| Q |
322 |
tgtacacaatgttatctcagaatacatggtaaaatagttattgagatcaaattattgcttaccatttttctataatcgattaataactttaaagtatttg |
421 |
Q |
| |
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||| |||||||||||||| ||| | ||||||||||| |||| || || ||||||||||| ||||||||| || ||| |||||||||||| || ||| | |
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|
| T |
13610035 |
tgtccacaatgttatctcggaaaaaatggtaaaataattatcgaaattaaattattgctcgccatttttc-attatcaattaataactttgaactatgta |
13610133 |
T |
|
| Q |
422 |
tcattcttaatgtcatttgcgataatgtaggcaacaagcaaccttgaagccatagttctacggcgttacccagaaaatattgaagaaatacaggagatga |
521 |
Q |
| |
|
|| | ||||| |||||| ||| ||||||| ||| |||||||||||||||||| | ||| | ||||||||| | ||| || | | |||| |
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|
| T |
13610134 |
gtgttatcaatgttatttgcaatattgtaggcgacagagaaccttgaagccatagttatggagcgatgtacagaaaataaggctgaagtagaagcaatga |
13610233 |
T |
|
| Q |
522 |
caacattgagggctgaagctttagcacaaatgggtcgccttaaattgctcatcctgtggaatttgaatttttcaggaaatctcaattttctttctagtca |
621 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| ||||||||||||||||| ||| | |||||||||| ||||||| ||||||||||||||| ||| | |
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|
| T |
13610234 |
caacattgagggctgaagctttagcaaagatgactcgccttaaattgctcaagctgcgtgatttgaatttctcaggaagtctcaattttctttcaagtga |
13610333 |
T |
|
| Q |
622 |
tttggggtatctctgttgggataaatatcctttcacttgtttgccatcaagttttcagcc |
681 |
Q |
| |
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||||||||||| | |||||| |||||||||||||| ||||||||||||||||||||||| |
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|
| T |
13610334 |
attggggtatctatattgggaaaaatatcctttcacatgtttgccatcaagttttcagcc |
13610393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 33058913 - 33058867
Alignment:
| Q |
150 |
gtggatttcatcctgaaattggtttaagagttctcattgataaatca |
196 |
Q |
| |
|
||||||||||| |||| ||||| |||||||||||||||||||||||| |
|
|
| T |
33058913 |
gtggatttcatgctgatattggattaagagttctcattgataaatca |
33058867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 33389422 - 33389376
Alignment:
| Q |
150 |
gtggatttcatcctgaaattggtttaagagttctcattgataaatca |
196 |
Q |
| |
|
||||||||||| |||| ||||| |||||||||||||||||||||||| |
|
|
| T |
33389422 |
gtggatttcatgctgatattggattaagagttctcattgataaatca |
33389376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 33643332 - 33643378
Alignment:
| Q |
150 |
gtggatttcatcctgaaattggtttaagagttctcattgataaatca |
196 |
Q |
| |
|
||||||||||| |||| ||||| |||||||||||||||||||||||| |
|
|
| T |
33643332 |
gtggatttcatgctgatattgggttaagagttctcattgataaatca |
33643378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 31561539 - 31561585
Alignment:
| Q |
150 |
gtggatttcatcctgaaattggtttaagagttctcattgataaatca |
196 |
Q |
| |
|
||||||||||| |||| ||||| |||||||||||| ||||||||||| |
|
|
| T |
31561539 |
gtggatttcatgctgatattggattaagagttctccttgataaatca |
31561585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 33411302 - 33411256
Alignment:
| Q |
150 |
gtggatttcatcctgaaattggtttaagagttctcattgataaatca |
196 |
Q |
| |
|
||||||||||| |||| ||||| ||| |||||||||||||||||||| |
|
|
| T |
33411302 |
gtggatttcatgctgatattggattaggagttctcattgataaatca |
33411256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 7e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 180 - 363
Target Start/End: Complemental strand, 6472638 - 6472455
Alignment:
| Q |
180 |
ttctcattgataaatcattcataacttgtgagaaggggagaatttttatgcatggtttgttcaaagaactaggcaagagtatcgttagagaaaaatcacc |
279 |
Q |
| |
|
|||| |||||||||||||||||||| | |||| ||||||||||| |||||||| ||||||||||||||| || ||||| |||||||||||||||||| |
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|
| T |
6472638 |
ttctgattgataaatcattcataaccagcgagatggggagaatttgtatgcatgatttgttcaaagaacttgggaagagcatcgttagagaaaaatcaat |
6472539 |
T |
|
| Q |
280 |
caaagagccaagaaagtggaacaggttgtgggactacaaggatgtacacaatgttatctcagaatacatggtaaaatagttatt |
363 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||| |||||||||| |||||||| |
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|
| T |
6472538 |
gaaagaaccaagaaagtggaactggttgtgggactacaaagatgttcacaatgttatctcagaaaacatggtaaagtagttatt |
6472455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 14724939 - 14725022
Alignment:
| Q |
22 |
agatattatggatgtacttcgaattagttttgatggattagatgatacggaaaaggacatctttctagatattgcatgtttctt |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| || | ||||| |||||||| || |||||||||||||| |||||||| |
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|
| T |
14724939 |
agatattatggatgtacttcgaattagttttgaaggactaaaggatacagaaaaggatatatttctagatattgcttgtttctt |
14725022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 17598823 - 17598740
Alignment:
| Q |
22 |
agatattatggatgtacttcgaattagttttgatggattagatgatacggaaaaggacatctttctagatattgcatgtttctt |
105 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||| || | ||||| |||||||| || |||||||||||||| |||||||| |
|
|
| T |
17598823 |
agatattatggatgtacttttaattagttttgaaggactaaaggatacagaaaaggatatatttctagatattgcttgtttctt |
17598740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 17439558 - 17439604
Alignment:
| Q |
150 |
gtggatttcatcctgaaattggtttaagagttctcattgataaatca |
196 |
Q |
| |
|
||||||||||| |||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
17439558 |
gtggatttcatgctgatattggattaagagttctcattaataaatca |
17439604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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