View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16226_low_6 (Length: 454)
Name: NF16226_low_6
Description: NF16226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16226_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Original strand, 47918207 - 47918603
Alignment:
| Q |
19 |
ccattctgccgcaaacatgatatagaacctaggaatcctgaatcatacttcaacttaaagggtgatccttacaaaaacaaagtgaaaccagattttgtga |
118 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47918207 |
ccattctgccacaaacatgatatagaacctaggaatcctgaatcatacttcaacttaaagggtgatccttacaaaaacaaagtgaaactagattttgtga |
47918306 |
T |
|
| Q |
119 |
aggattgtagaaggctgaagcgcgagtatgatgagtttaaggtcaaaatcaatggttttcccgactctatccgtcgcaggtcagatgcttttcacgcaag |
218 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47918307 |
aggatcgtagaaggctgaagcgtgagtatgatgagtttaaggtcaaaatcaatggttttcccgactctatccatcgcaggtcagatgcttttcacgcaag |
47918406 |
T |
|
| Q |
219 |
tgaggaaaacaagaccatgaatcagagacaaaataggggagatgaacctgttgagcctataaaggttcgaaaagcactcaaagggtgaccattccggcat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918407 |
tgaggaaaacaagaccatgaatcagagacaaaataggggagatgaacctgttgagcctataaaggttcgaaaagcactcaaagggtgaccattccggcat |
47918506 |
T |
|
| Q |
319 |
aattcaggtactaattaagcttttgaaattgctgctgcaatctatgatattataaaaaattgcagtcagagtattagtaatataaatcaagattata |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47918507 |
aattcaggtactaattaagcttttgaaattgctgctgcaatctatgatattataaaaaattgcagtcagagtattagtaatataaatcaagattata |
47918603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 29919028 - 29918750
Alignment:
| Q |
19 |
ccattctgccgcaaacatgatatagaacctaggaatcctgaatcatacttcaacttaaagggtgatccttacaaaaacaaagtgaaaccagattttgtga |
118 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| |
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| T |
29919028 |
ccattctgccgcaaacatgatatagagcctaggaatcctgaatcatacttcaacttaaagagagatccttacaaaaacaaagtgaaacctgattttgtga |
29918929 |
T |
|
| Q |
119 |
aggattgtagaaggctgaagcgcgagtatgatgagtttaaggtcaaaatcaatggttttcccgactctatccgtcgcaggtcagatgcttttcacgcaag |
218 |
Q |
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||||| |||||||||||||||| |||||||||||||| ||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29918928 |
aggatcgtagaaggctgaagcgtgagtatgatgagttcaaggttagaatcaatggtttgcccgactctatccgtcgcaggtcagatgcttttcatgcaag |
29918829 |
T |
|
| Q |
219 |
tgaggaaaacaagaccatga---atcagagacaaaataggggagatgaacctgttgagcctataaaggttcgaaaagca |
294 |
Q |
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| T |
29918828 |
agaggaaatcaaggccatgaaacatcagagacaaaataggggtgatgaacctgttgagcctataaaggttcaaaaagca |
29918750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 412
Target Start/End: Complemental strand, 29918694 - 29918570
Alignment:
| Q |
291 |
agcactcaaagggtgaccattccggcataattcaggtactaatta---agcttttgaaattgctgctgcaatctatgatattataaaaaattgcagtcag |
387 |
Q |
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||||||||| |||||||||| | ||||||||||||||||||| || | |||||||||||||||||| |||||||| ||||||||||| | |||| || |
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| T |
29918694 |
agcactcaaggggtgaccatgctggcataattcaggtactaagtactaaacttttgaaattgctgctgtgatctatgaaattataaaaaaattcagttag |
29918595 |
T |
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| Q |
388 |
agtattagtaatataaatcaagatt |
412 |
Q |
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|| |||||||||||||||||||||| |
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| T |
29918594 |
agaattagtaatataaatcaagatt |
29918570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 14610146 - 14610199
Alignment:
| Q |
108 |
agattttgtgaaggattgtagaaggctgaagcgcgagtatgatgagtttaaggt |
161 |
Q |
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|||||||||||||||| | |||||| ||||| | |||||||||||||| ||||| |
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| T |
14610146 |
agattttgtgaaggatagaagaagggtgaagagggagtatgatgagttcaaggt |
14610199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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