View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16226_low_8 (Length: 396)
Name: NF16226_low_8
Description: NF16226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16226_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 316
Target Start/End: Complemental strand, 46356351 - 46356039
Alignment:
| Q |
7 |
gagaagcaaaggtgtaaattatagtactatataacgatatcagtgggtgtgaatggtaccccattatcctgaaaagctcgaatctcaatcagtgaattag |
106 |
Q |
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| T |
46356351 |
gagaaacaaaggtgtaaattatagtactatataacgatatcagtgggtgtgaatggtaccccattaccctgaaaagctcgaatctcaatcagtgaattag |
46356252 |
T |
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| Q |
107 |
aagactcttttttaaccatatctatgagaaaaagtataagaaagagggtatcatattctttctaatagtatttgcttaaaatnnnnnnngaaagggaggg |
206 |
Q |
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| T |
46356251 |
aagactcttttttaaccatatctatgagaaaaagtataagaaagagggtatcatattctttctaatagtatttgcttaaaat-aaaaaagaaagggaggg |
46356153 |
T |
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| Q |
207 |
aatatagactttgaaatttgcactaaaactgacatatgaagcagcagatat----aaggaataagtgaatgtgtttaatttgctagtcgcacacgaccat |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
46356152 |
aatatagactttgaaatttgcactaaaactgacatatgaagcagcagatataaggaaggaataagtgaatgtgtttaatttgctagtcacacacgaccat |
46356053 |
T |
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| Q |
303 |
gagactgaatctgc |
316 |
Q |
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| T |
46356052 |
gagactgaatctgc |
46356039 |
T |
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