View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16226_low_9 (Length: 393)
Name: NF16226_low_9
Description: NF16226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16226_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 358
Target Start/End: Original strand, 26437558 - 26437938
Alignment:
| Q |
10 |
ataatactcatgtacctgtaaaataaacaacacagttcgtatgaaaactta-----------ataataaactcatcgacgctgttaactcatttta---- |
94 |
Q |
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| T |
26437558 |
ataatactcatgtacctgtaaaataaacaacacagttcgtatgaaaacttatgctaaacttaataataaactcatcgacgctgttaactcattttagcat |
26437657 |
T |
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| Q |
95 |
-----------------ccttgagaatccatgcaatggcttcttctctggtgctggattcgagagagcgagattggaatcttgagacatagtcgaaacca |
177 |
Q |
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| T |
26437658 |
gaagtagtttgtatttaccttgagaatccatgcaatggcttcttctctggtgctggattcgagagagcgagattggaatcttgagacgtagtcgaaacca |
26437757 |
T |
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| Q |
178 |
ggaacaaacttgaactcgtgctcgatgaaaacagcaatcgaatcctcctcttcctcggcaaataatgacgacgacggcaactgcgatgatgatgatgaat |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26437758 |
ggaacaaacttgaactcgtgctcgatgaaaacagcaatcgactcctcctcttcctcggcaaataatgacgacgacggcaactgcgatgatgatgatgaat |
26437857 |
T |
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| Q |
278 |
ccaggtcggaggagcattccggtaaatctccggtgaggacctccgacgagtcctccccgcagaggagctcgcagtcggagg |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26437858 |
ccaggtcggaggagcattccggtaaatctccggtgaggacctccgacgagtcctccccgcagaggagctcgcagtcggagg |
26437938 |
T |
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