View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16227_high_13 (Length: 334)

Name: NF16227_high_13
Description: NF16227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16227_high_13
NF16227_high_13
[»] chr7 (2 HSPs)
chr7 (167-333)||(8692798-8692964)
chr7 (9-153)||(8692178-8692322)
[»] chr3 (36 HSPs)
chr3 (15-153)||(28137145-28137283)
chr3 (32-153)||(28479061-28479182)
chr3 (34-153)||(26138411-26138530)
chr3 (271-330)||(28149117-28149176)
chr3 (37-144)||(28508201-28508308)
chr3 (34-144)||(26231835-26231945)
chr3 (262-330)||(28184984-28185052)
chr3 (262-330)||(28054593-28054661)
chr3 (262-330)||(28065018-28065086)
chr3 (262-330)||(28161142-28161210)
chr3 (274-330)||(28480584-28480640)
chr3 (274-330)||(28509767-28509823)
chr3 (41-144)||(26126275-26126378)
chr3 (44-144)||(26176329-26176429)
chr3 (262-330)||(28082922-28082990)
chr3 (37-118)||(26203828-26203909)
chr3 (167-214)||(28135293-28135340)
chr3 (264-330)||(27919546-27919612)
chr3 (264-330)||(28151134-28151200)
chr3 (37-130)||(26109519-26109612)
chr3 (281-330)||(28507044-28507093)
chr3 (169-213)||(28054831-28054875)
chr3 (169-213)||(28065256-28065300)
chr3 (73-148)||(27458047-27458122)
chr3 (71-153)||(27357069-27357151)
chr3 (264-330)||(27979674-27979740)
chr3 (264-330)||(28003392-28003458)
chr3 (78-146)||(28680491-28680559)
chr3 (71-146)||(28163442-28163517)
chr3 (96-146)||(11422017-11422067)
chr3 (112-146)||(27921042-27921076)
chr3 (116-146)||(28057978-28058008)
chr3 (116-146)||(28068403-28068433)
chr3 (71-145)||(28187453-28187527)
chr3 (264-308)||(28036657-28036701)
chr3 (78-146)||(28152487-28152555)
[»] scaffold0257 (2 HSPs)
scaffold0257 (271-330)||(18537-18596)
scaffold0257 (71-145)||(19894-19968)
[»] chr2 (3 HSPs)
chr2 (71-153)||(22400983-22401065)
chr2 (71-153)||(22792687-22792769)
chr2 (71-153)||(22966160-22966242)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 167 - 333
Target Start/End: Original strand, 8692798 - 8692964
Alignment:
Q  167 ctgatgtagtagaaccctccaactaattgcgtgtcataaaaatgtaaaatttagttgcatgcagcatatttctaagaaacacttgaaataaaatatattt 266  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  8692798 ctgatgtagtagaaccctccaactaattgcgtatcataaaaatgtaaaatttagttgcatgcagcatatttgtaagaaacacttgaaataaaatattttt 8692897  T
Q  267 cttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttgccg 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8692898 cttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttgccg 8692964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 8692178 - 8692322
Alignment:
Q  9 agcagagatgaaatagaagtacaagaaaatatagtctaatagccaataggggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttgg 108  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8692178 agcaaagatgaaatagaagtacaagaaaatatagtctaatagccaataagggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttgg 8692277  T
Q  109 agtatgtcaattgatgcttaagatcctccacatgttgactgaaaa 153  Q
    || ||||||||||||||||||||||||||||||||||||| ||||    
T  8692278 agcatgtcaattgatgcttaagatcctccacatgttgacttaaaa 8692322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 8e-49; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 28137283 - 28137145
Alignment:
Q  15 gatgaaatagaagtacaagaaaatatagtctaatagccaataggggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttggagtatg 114  Q
    ||||||||| ||||||  ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||    
T  28137283 gatgaaataaaagtacttgaaaatatagtctaataaccaataggtgcacttaaaaccgcctcttgttgaattatattcttcaaaacagctttagaggatg 28137184  T
Q  115 tcaattgatgcttaagatcctccacatgttgactgaaaa 153  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  28137183 tcaattgatgcttaagatcttccacatgttgacttaaaa 28137145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 28479061 - 28479182
Alignment:
Q  32 agaaaatatagtctaatagccaataggggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaaga 131  Q
    |||||||||| |||||||||| | ||||||||||||||| |||||||||||||| ||| ||| |||||||||||  ||| |||||||||| |||||||||    
T  28479061 agaaaatataatctaatagccgaaaggggcacttaaaaccgcctcttgttgaatgatagtctccaaaacagcttcagaggatgtcaattgttgcttaaga 28479160  T
Q  132 tcctccacatgttgactgaaaa 153  Q
    || |||||||||||||| ||||    
T  28479161 tcttccacatgttgacttaaaa 28479182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 26138411 - 26138530
Alignment:
Q  34 aaaatatagtctaatagccaataggggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatc 133  Q
    ||||||||||||||||||||||||||||||| |||||  ||||||||||||| |||  || ||||||| |||  ||| ||||||| || |||||||||||    
T  26138411 aaaatatagtctaatagccaataggggcactcaaaaccacctcttgttgaatgatacgctccaaaacaacttcagaggatgtcaactgttgcttaagatc 26138510  T
Q  134 ctccacatgttgactgaaaa 153  Q
     |||||||||||||| ||||    
T  26138511 ttccacatgttgacttaaaa 26138530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 28149176 - 28149117
Alignment:
Q  271 tttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 330  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28149176 tttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttg 28149117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 28508201 - 28508308
Alignment:
Q  37 atatagtctaatagccaataggggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctc 136  Q
    |||||||||||||||| |||||||||  ||||||| ||||||||||||| ||| ||| |||||||||||  ||| |||||||||| ||||||||||| ||    
T  28508201 atatagtctaatagccgataggggcatgtaaaactacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaattgttgcttaagatcttc 28508300  T
Q  137 cacatgtt 144  Q
    ||| ||||    
T  28508301 cacctgtt 28508308  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 26231835 - 26231945
Alignment:
Q  34 aaaatatagtctaatagccaataggggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatc 133  Q
    ||||||||||||||||||||| ||||||||||||| |  ||||||||||| | ||| ||| ||||| |||||  ||| |||||||||||||||||||| |    
T  26231835 aaaatatagtctaatagccaacaggggcacttaaagccacctcttgttgattgatactctccaaaatagcttgagaggatgtcaattgatgcttaagaac 26231934  T
Q  134 ctccacatgtt 144  Q
     ||||||||||    
T  26231935 ttccacatgtt 26231945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 28185052 - 28184984
Alignment:
Q  262 tatttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 330  Q
    |||||| ||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||    
T  28185052 tatttcatttttagctttatatgcacaacgcggtggtacgacattacatgatttacctgagaaggtttg 28184984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 28054661 - 28054593
Alignment:
Q  262 tatttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 330  Q
    |||||| |||||| |||||||||||| |||||||||||| ||| |||||||||||||||||||||||||    
T  28054661 tatttcatttttatctttatatgcacgatgcagtggtacaataatacatgatttacctgagaaggtttg 28054593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 28065086 - 28065018
Alignment:
Q  262 tatttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 330  Q
    |||||| |||||| |||||||||||| |||||||||||| ||| |||||||||||||||||||||||||    
T  28065086 tatttcatttttatctttatatgcacgatgcagtggtacaataatacatgatttacctgagaaggtttg 28065018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 28161210 - 28161142
Alignment:
Q  262 tatttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 330  Q
    |||||| ||||||||||||||||||||| || ||| ||||| |||||||||||||||||||||||||||    
T  28161210 tatttcatttttagctttatatgcacaacgcggtgttacgacattacatgatttacctgagaaggtttg 28161142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 28480584 - 28480640
Alignment:
Q  274 agctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 330  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28480584 agctttttatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttg 28480640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 28509767 - 28509823
Alignment:
Q  274 agctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 330  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  28509767 agctttatatgcacaatgcggtggtacgatattacttgatttacctgagaaggtttg 28509823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 26126275 - 26126378
Alignment:
Q  41 agtctaatagccaataggggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccaca 140  Q
    |||||||||||||| ||||||||||||| |  ||||||||||| | ||| ||| |||||||||||  ||| ||| |||||||||||||||| | ||||||    
T  26126275 agtctaatagccaacaggggcacttaaagccacctcttgttgattgatactctccaaaacagcttgagaggatgccaattgatgcttaagaacttccaca 26126374  T
Q  141 tgtt 144  Q
    ||||    
T  26126375 tgtt 26126378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 26176329 - 26176429
Alignment:
Q  44 ctaatagccaataggggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgt 143  Q
    ||||||||||| ||||||||||||| |  ||||||||||| | ||| ||| |||||||||||  ||| ||| |||||||||||||||| | |||||||||    
T  26176329 ctaatagccaacaggggcacttaaagccacctcttgttgattgatactctccaaaacagcttgagaggatgccaattgatgcttaagaacttccacatgt 26176428  T
Q  144 t 144  Q
    |    
T  26176429 t 26176429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 28082990 - 28082922
Alignment:
Q  262 tatttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 330  Q
    |||||| ||||||||||||||||||||||| | ||||| |||||| |||||||||||||| ||||||||    
T  28082990 tatttcatttttagctttatatgcacaatgtattggtatgatattgcatgatttacctgaaaaggtttg 28082922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 26203828 - 26203909
Alignment:
Q  37 atatagtctaatagccaataggggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaa 118  Q
    |||||||||||||||||||||||| ||| |||||  ||||||||||||| ||| ||| |||||||||||  ||| |||||||    
T  26203828 atatagtctaatagccaataggggaactgaaaaccacctcttgttgaatgatactctccaaaacagcttcagaggatgtcaa 26203909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 28135340 - 28135293
Alignment:
Q  167 ctgatgtagtagaaccctccaactaattgcgtgtcataaaaatgtaaa 214  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||    
T  28135340 ctgatgtagtagaaccctccaactaattgcatatcataaaaatgtaaa 28135293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 330
Target Start/End: Complemental strand, 27919612 - 27919546
Alignment:
Q  264 tttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 330  Q
    |||||||||||||||||||| |||||||  ||||||| ||||||||| |||| | ||||||||||||    
T  27919612 tttcttttttagctttatattcacaatgaggtggtactatattacattattttcttgagaaggtttg 27919546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 330
Target Start/End: Complemental strand, 28151200 - 28151134
Alignment:
Q  264 tttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 330  Q
    |||||||||||| |||||||||||||||  ||||||| ||||||||| |||| | ||||||||||||    
T  28151200 tttcttttttagatttatatgcacaatgaggtggtactatattacattattttcttgagaaggtttg 28151134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 26109519 - 26109612
Alignment:
Q  37 atatagtctaatagccaataggggcacttaaaactgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaag 130  Q
    ||||| ||||||||||||||||||| ||||||||  ||||||||||||| ||| ||| ||| | |||||  ||| |||||||||| || |||||    
T  26109519 atataatctaatagccaataggggcccttaaaaccacctcttgttgaatgatactctccaagaaagcttcagaggatgtcaattgttgattaag 26109612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 28507044 - 28507093
Alignment:
Q  281 tatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 330  Q
    |||||||||||  ||||||||||||||||||||||||| |||||||||||    
T  28507044 tatgcacaatgtggtggtacgatattacatgatttaccggagaaggtttg 28507093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 28054875 - 28054831
Alignment:
Q  169 gatgtagtagaaccctccaactaattgcgtgtcataaaaatgtaa 213  Q
    |||||||||||||||||||||||||||| | ||||||||||||||    
T  28054875 gatgtagtagaaccctccaactaattgcatatcataaaaatgtaa 28054831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 28065300 - 28065256
Alignment:
Q  169 gatgtagtagaaccctccaactaattgcgtgtcataaaaatgtaa 213  Q
    |||||||||||||||||||||||||||| | ||||||||||||||    
T  28065300 gatgtagtagaaccctccaactaattgcatatcataaaaatgtaa 28065256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 27458047 - 27458122
Alignment:
Q  73 cctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttgact 148  Q
    |||||| |||||| ||| ||||||||||||  |  ||| |||||||||||||||||||||| ||||||| ||||||    
T  27458047 cctctttttgaataatactcttcaaaacagtctccgaggatgtcaattgatgcttaagatcttccacattttgact 27458122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 27357151 - 27357069
Alignment:
Q  71 tgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttgactgaaaa 153  Q
    |||||||| |||||| ||| ||||||||||||  |  |||  ||||| ||||||||||||||| |||||||||||||| ||||    
T  27357151 tgcctcttcttgaatgatactcttcaaaacagtctcagaggttgtcagttgatgcttaagatcttccacatgttgacttaaaa 27357069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 330
Target Start/End: Complemental strand, 27979740 - 27979674
Alignment:
Q  264 tttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 330  Q
    |||||||||||||||||||| |||||||  ||||||| ||||||||| |||| |  |||||||||||    
T  27979740 tttcttttttagctttatattcacaatgaggtggtactatattacattattttctggagaaggtttg 27979674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 330
Target Start/End: Complemental strand, 28003458 - 28003392
Alignment:
Q  264 tttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 330  Q
    |||||||||||| ||||||||||| |||  ||||||| ||||||||| |||| | ||||||||||||    
T  28003458 tttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttg 28003392  T

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Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 28680491 - 28680559
Alignment:
Q  78 tgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttga 146  Q
    |||||||| ||| ||| |||||||||||  ||  ||||||| |||||||||||||| ||||||||||||    
T  28680491 tgttgaatgatagtctccaaaacagcttcagaagatgtcaaatgatgcttaagatcttccacatgttga 28680559  T

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Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 28163517 - 28163442
Alignment:
Q  71 tgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttga 146  Q
    |||||| |||||| | || |||| |||||||||||  ||| | | ||||||||||||||||||| |||||||||||    
T  28163517 tgcctcctgttgagtgatgttctgcaaaacagcttcagaggaagccaattgatgcttaagatccgccacatgttga 28163442  T

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Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 11422067 - 11422017
Alignment:
Q  96 aaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttga 146  Q
    |||||||||| |||| | | |||||||||||||||||||||||| ||||||    
T  11422067 aaaacagcttcggaggaagccaattgatgcttaagatcctccacgtgttga 11422017  T

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Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 27921076 - 27921042
Alignment:
Q  112 atgtcaattgatgcttaagatcctccacatgttga 146  Q
    |||||||||||||||||||||| ||||||||||||    
T  27921076 atgtcaattgatgcttaagatcttccacatgttga 27921042  T

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Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 146
Target Start/End: Complemental strand, 28058008 - 28057978
Alignment:
Q  116 caattgatgcttaagatcctccacatgttga 146  Q
    |||||||||||||||||||||||||||||||    
T  28058008 caattgatgcttaagatcctccacatgttga 28057978  T

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Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 146
Target Start/End: Complemental strand, 28068433 - 28068403
Alignment:
Q  116 caattgatgcttaagatcctccacatgttga 146  Q
    |||||||||||||||||||||||||||||||    
T  28068433 caattgatgcttaagatcctccacatgttga 28068403  T

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Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 28187527 - 28187453
Alignment:
Q  71 tgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttg 145  Q
    |||||| |||||| | || |||| |||||||||||   || | | ||||||||||||||||||||||||||||||    
T  28187527 tgcctcctgttgagtgatgttctgcaaaacagcttcacaggaagccaattgatgcttaagatcctccacatgttg 28187453  T

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Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 28036701 - 28036657
Alignment:
Q  264 tttcttttttagctttatatgcacaatgcagtggtacgatattac 308  Q
    |||| |||||||||||||||||||||||  ||||||| |||||||    
T  28036701 tttcatttttagctttatatgcacaatgaggtggtactatattac 28036657  T

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Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 28152555 - 28152487
Alignment:
Q  78 tgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttga 146  Q
    |||||||| ||| ||| |||| ||||||  ||| |||||||||||||||||||||| || | |||||||    
T  28152555 tgttgaatgatagtctccaaatcagcttcagaggatgtcaattgatgcttaagatcttcaagatgttga 28152487  T

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Target: scaffold0257 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 18596 - 18537
Alignment:
Q  271 tttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttg 330  Q
    |||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||    
T  18596 tttagctttatatgcacaatgcggttgtaggatattacatgatttacctgagaaggtttg 18537  T

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Target: scaffold0257; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 19968 - 19894
Alignment:
Q  71 tgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttg 145  Q
    ||||||||||||| | ||  ||| |||||||||||  ||| | | |||||||||||||||||||| |||||||||    
T  19968 tgcctcttgttgagtgatgctctgcaaaacagcttcagaggaagccaattgatgcttaagatccttcacatgttg 19894  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 22401065 - 22400983
Alignment:
Q  71 tgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttgactgaaaa 153  Q
    |||||||| |||||| ||| ||||||||||||  |  |||  ||||| ||||||||||||||| |||||||||||||| ||||    
T  22401065 tgcctcttcttgaatgatactcttcaaaacagtctcagaggttgtcagttgatgcttaagatcttccacatgttgacttaaaa 22400983  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 22792769 - 22792687
Alignment:
Q  71 tgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttgactgaaaa 153  Q
    |||||||| |||||| ||| ||||||||||||  |  |||  ||||| ||||||||||||||| |||||||||||||| ||||    
T  22792769 tgcctcttcttgaatgatactcttcaaaacagtctcagaggttgtcagttgatgcttaagatcttccacatgttgacttaaaa 22792687  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 22966242 - 22966160
Alignment:
Q  71 tgcctcttgttgaattatattcttcaaaacagctttggagtatgtcaattgatgcttaagatcctccacatgttgactgaaaa 153  Q
    |||||||| |||||| ||| ||||||||||||  |  |||  ||||| ||||||||||||||| |||||||||||||| ||||    
T  22966242 tgcctcttcttgaatgatactcttcaaaacagtctcagaggttgtcagttgatgcttaagatcttccacatgttgacttaaaa 22966160  T

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