View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16227_high_1_N (Length: 506)
Name: NF16227_high_1_N
Description: NF16227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16227_high_1_N |
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Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 21 - 490
Target Start/End: Complemental strand, 39790233 - 39789764
Alignment:
| Q |
21 |
catcatcaccacagaaatcaacaccaagtccctttgcaagatacatctcattatcaccaaactctccctcctcatcaaaactcaccctgcaaactctatc |
120 |
Q |
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| T |
39790233 |
catcaccaccacagaaatcaacaccaagtccctttgcaagatacatctcattatcaccaaactctccctcctcatcaaaactcaccctgcaaactctatc |
39790134 |
T |
|
| Q |
121 |
cacttcttcactctgcatcattctattcatcacactgaactcatcatagctttcttcatcttcaatatcactttcttccacatcttcctcttcttcacgc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39790133 |
cacttcttcactctgcatcattctattcatcacactgaactcatcatagccttcttcatcttcaatatcactttcttccacatcttcctcttcttcacgc |
39790034 |
T |
|
| Q |
221 |
aagccggttcgcttagaaagagagaaagatggaatggtctcaagtgcaaaacctctttgttgtctagctgaatacctcttagaagaagagtccatataac |
320 |
Q |
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| T |
39790033 |
aagccggttcgcttagaaagagagaaagatggaatggtctcaagtgcaaaacctctttgttgtctagctgaatacctcttagaagaagagtccatataac |
39789934 |
T |
|
| Q |
321 |
ttaatctctcttcattgttgttgaaagtagtagcataggctaagtcttccaagtttccttcagattgaactcttctaaaccctttgttttgactttcaag |
420 |
Q |
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| T |
39789933 |
ttaatctctcttcattgttgttgaaagtagtagcataggctaagtcttccaagtttccttcagattgaactcttctaaaccctttgttttgtctttcaag |
39789834 |
T |
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| Q |
421 |
gtcagaaatggagggtgaaattggagaagaactgcatgagagtctgtgattgttatgatgatgatgatgt |
490 |
Q |
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| T |
39789833 |
gtcagaaatggagggtgaaattggagaagaactgcatgagagtctgtgattgttatgatgatgatgatgt |
39789764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 209 - 483
Target Start/End: Original strand, 39411722 - 39411978
Alignment:
| Q |
209 |
tcttcttcacgcaagccggttcgcttagaaagagagaaagatggaatggtctcaagtgcaaaacctctttgttgtctagctgaatacctcttagaagaag |
308 |
Q |
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||||||||||||||||| ||| |||| |||||||||||||||||||||||||| ||||| || ||||||||| || |||||||||| |||||||||| |
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| T |
39411722 |
tcttcttcacgcaagcctgtttgctttgaaagagagaaagatggaatggtctctagtgcgaagcctctttgt---ctcactgaataccttttagaagaag |
39411818 |
T |
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| Q |
309 |
agtccatataacttaatctctcttcattgttgttgaaagtagtagcataggctaagtcttccaagtttccttcagattgaactcttctaa---acccttt |
405 |
Q |
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| T |
39411819 |
agtccatat------------------tgttgttacaattagtggcataggctaagtcttccaagttcccttcagattgaactcttctaatcaacccttt |
39411900 |
T |
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| Q |
406 |
gttttgactttcaaggtcagaaatggagggtgaaattggagaagaactgcatgagagtctgtgattgttatgatgatg |
483 |
Q |
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| T |
39411901 |
gttttgtctttcaagatcagaaatggaaggagaaattggagaagaagtgcatgagagtttgtgattgtgatgatgatg |
39411978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 39411547 - 39411631
Alignment:
| Q |
37 |
atcaacaccaagtccctttgcaagatacatctcattatcaccaaactctccctcctcatcaaaactcaccctgcaaactctatcc |
121 |
Q |
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|||||||||||||||||||||||||||||| || |||| ||||| || |||||||||| |||||||||||||| ||||||||||| |
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| T |
39411547 |
atcaacaccaagtccctttgcaagatacatttctttattaccaacctttccctcctcaccaaaactcaccctgaaaactctatcc |
39411631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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