View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16227_high_3 (Length: 369)

Name: NF16227_high_3
Description: NF16227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16227_high_3
NF16227_high_3
[»] chr7 (24 HSPs)
chr7 (17-345)||(27830933-27831261)
chr7 (61-345)||(8659189-8659473)
chr7 (63-344)||(3147092-3147373)
chr7 (59-344)||(8654274-8654559)
chr7 (61-345)||(1301286-1301570)
chr7 (17-345)||(6789294-6789622)
chr7 (59-345)||(10494432-10494718)
chr7 (46-345)||(8585764-8586063)
chr7 (24-186)||(8616470-8616632)
chr7 (59-345)||(13333514-13333800)
chr7 (36-345)||(8646678-8646987)
chr7 (81-345)||(8667265-8667529)
chr7 (17-341)||(17260023-17260347)
chr7 (202-329)||(8545600-8545727)
chr7 (37-134)||(17267741-17267838)
chr7 (23-133)||(8383146-8383256)
chr7 (17-179)||(8601756-8601918)
chr7 (229-345)||(29581899-29582015)
chr7 (202-345)||(7877791-7877934)
chr7 (17-304)||(8570093-8570380)
chr7 (61-130)||(8673894-8673963)
chr7 (229-345)||(29577730-29577846)
chr7 (61-130)||(8664161-8664228)
chr7 (94-131)||(8664919-8664956)
[»] chr8 (2 HSPs)
chr8 (37-345)||(43744618-43744926)
chr8 (24-345)||(12528293-12528614)
[»] chr5 (1 HSPs)
chr5 (37-345)||(28219720-28220028)
[»] chr2 (8 HSPs)
chr2 (61-345)||(16657575-16657859)
chr2 (23-345)||(14703196-14703518)
chr2 (17-345)||(7542008-7542336)
chr2 (17-344)||(12258640-12258967)
chr2 (36-345)||(43625213-43625522)
chr2 (34-345)||(12234488-12234799)
chr2 (63-345)||(16662050-16662332)
chr2 (24-345)||(12245464-12245785)
[»] chr1 (4 HSPs)
chr1 (61-345)||(4678616-4678899)
chr1 (24-345)||(15594823-15595144)
chr1 (99-334)||(34466862-34467089)
chr1 (62-122)||(52549293-52549353)
[»] chr4 (4 HSPs)
chr4 (24-335)||(30775041-30775352)
chr4 (24-344)||(9335950-9336270)
chr4 (241-338)||(35132454-35132551)
chr4 (37-122)||(35132259-35132344)


Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 345
Target Start/End: Complemental strand, 27831261 - 27830933
Alignment:
17 ggacatcatcatctatactactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctc 116  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27831261 ggacaacatcatctatactactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctc 27831162  T
117 aaactttgcacgagtgatcgttgaaaagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgcc 216  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27831161 aaactttgcacgagtgatcattgaaaagaagtcaatgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgcc 27831062  T
217 ttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcc 316  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
27831061 ttctcacattaggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaaatagttcaccatcc 27830962  T
317 tattatcaaagtcctctccaccaaggtga 345  Q
    |||||||||||||||||||||||||||||    
27830961 tattatcaaagtcctctccaccaaggtga 27830933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 61 - 345
Target Start/End: Original strand, 8659189 - 8659473
Alignment:
61 agacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtgatcgttgaaaagaagtcagtgccctcaa 160  Q
    ||||||||||||||||| | |||||| ||||| ||||| |||||||| |||||||||||| | |||||||||||   |||| |||||||  | |||| ||    
8659189 agacaactctcaacagttttcatacactcattaaaaagatccatattcatttcctcaaacctggcacgagtgattaatgaacagaagtctattccctgaa 8659288  T
161 ataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttccc 260  Q
    |||| | ||| | ||||| ||| ||| ||| || ||||||||||||||| |||||| |||| ||    ||||||| |||||| |||| | ||||||| ||    
8659289 ataaagaatcgacctcaacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacaggcagttctcaacctccttaaggattttgggttacc 8659388  T
261 actaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggtga 345  Q
    ||||||||||||| | |||||||| |||||| |||| ||||||||||||||||| ||  |||||||||||||||| |||||||||    
8659389 actaatgtccactttattcttctttttgaactcctctacaaagtagttcaccattctgctatcaaagtcctctcctccaaggtga 8659473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 63 - 344
Target Start/End: Original strand, 3147092 - 3147373
Alignment:
63 acaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtgatcgttgaaaagaagtcagtgccctcaaat 162  Q
    |||||||| |||||| |||| ||| ||| ||||||| ||||||||||||||||||||||| ||||||||||| | |||||| ||||||   |||| ||||    
3147092 acaactcttaacagtttccaaacactcagtgaaaagatccatattgatttcctcaaacttggcacgagtgattgatgaaaataagtcaaatccctgaaat 3147191  T
163 aaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttcccac 262  Q
    || | |||||||||||| || |||   |||| |||||| ||| | | ||||||  | || ||    ||| ||| |||||| |||||||||| |||| |||    
3147192 aaagaatctatctcaatggtggtgatgacagcaaaagatagtattcgttttgctctttcacacgccgttttcaacctccttaaggctcttgagttctcac 3147291  T
263 taatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggtg 344  Q
    ||||||| ||  | ||||||||||| ||| ||    ||||||||||||||||||||||||||||||||||||| ||||||||    
3147292 taatgtctaccttgttcttcttcttaaactcccgtgcaaagtagttcaccatcctattatcaaagtcctctcccccaaggtg 3147373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 59 - 344
Target Start/End: Original strand, 8654274 - 8654559
Alignment:
59 tgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtgatcgttgaaaagaagtcagtgccctc 158  Q
    |||||||||| |||||| | |  ||||| |||||||||| ||||||||| ||||||||||| || ||||||||||| | |||| | |||||  | |||      
8654274 tgagacaactgtcaacaatattgatacactcattgaaaaagtccatattaatttcctcaaatttagcacgagtgattgatgaagaaaagtcgattcccat 8654373  T
159 aaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttc 258  Q
    |||||| ||||||| ||||| ||| ||| ||| || |||||||||| ||||||||||| |||| ||    ||||||| |||||| |||| | |||||||     
8654374 aaataaagcatctacctcaacagtggtgacaaaagtaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttgggtta 8654473  T
259 ccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggtg 344  Q
    || ||||| |||||| | |||||||| |||||| |||| |||||||||| |||||| || ||||||||||| ||||| || |||||    
8654474 ccgctaatttccactttattcttctttttgaactcctctacaaagtagtacaccattctgttatcaaagtcttctccccctaggtg 8654559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 61 - 345
Target Start/End: Original strand, 1301286 - 1301570
Alignment:
61 agacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtgatcgttgaaaagaagtcagtgccctcaa 160  Q
    |||||||||||||| || |   |||| ||||| ||||| |||||||| |||||||||||||| |||||||||||   |||| |||||||  | |||| ||    
1301286 agacaactctcaacggtttttgtacactcattaaaaagatccatattaatttcctcaaacttggcacgagtgattaatgaacagaagtcgattccctgaa 1301385  T
161 ataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttccc 260  Q
    |||| | ||| | |||||  || ||| | | || |||||||||||||||||||||| |||| ||     |||||| |||||| |||| | |  |||| ||    
1301386 ataaagaatcgacctcaacggtggtgactaaagcaaaagagagtgtcctttttgccctctcacacgcaattctcaacctccttaaggatttctggttacc 1301485  T
261 actaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggtga 345  Q
    ||||||||||||| | ||||||||  ||||| |||| ||||||||| ||||||| |||||||||||||||||||| |||||||||    
1301486 actaatgtccactttattcttctttctgaactcctctacaaagtagctcaccattctattatcaaagtcctctcctccaaggtga 1301570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 6789294 - 6789622
Alignment:
17 ggacatcatcatctatactactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctc 116  Q
    ||||| |||||| || | |||||||||||||||||| ||||   |||||||||||||| |||| |||||| ||||| ||||  |||||||||||||||||    
6789294 ggacaacatcatttacaatactcttgtccatcttagcgtcaacaagacaactctcaacggtcttcatacactcattaaaaatatccatattgatttcctc 6789393  T
117 aaactttgcacgagtgatcgttgaaaagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgcc 216  Q
    |||||| || ||||| |  | ||||| ||||||  |||||| |||||| |  |||| ||||||||||||| | |||  ||||||||||  |||||| |||    
6789394 aaacttggcccgagtaagtgatgaaatgaagtcgatgccctgaaataaagagtctacctcaatagtagtgacgacaacaaaagagagtacccttttggcc 6789493  T
217 ttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcc 316  Q
     | || ||    ||||||| ||| || ||||| |||| ||| ||| |||| |||||| | |||||| |||| ||| ||||  |||||||||| ||||  |    
6789494 ctttcacacgcagttctcaaccttcttaaggcccttgagtttccagtaatatccactttgttcttcctcttaaactcctctgcaaagtagtttaccaatc 6789593  T
317 tattatcaaagtcctctccaccaaggtga 345  Q
      ||||||||||||||||| || ||||||    
6789594 ggttatcaaagtcctctcctccgaggtga 6789622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 59 - 345
Target Start/End: Complemental strand, 10494718 - 10494432
Alignment:
59 tgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtgatcgttgaaaagaagtcagtgccctc 158  Q
    |||||||||| |||||| | | |||||| ||  |||||| ||| ||||| ||||||||||| || ||||||||||| | |||| | |||||  | |||      
10494718 tgagacaactgtcaacaatattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccat 10494619  T
159 aaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttc 258  Q
    |||||| ||||| | |||||  || ||| ||| ||||||||||||| ||||||||||| |||| ||    ||||||| |||||| |||| | |||| |||    
10494618 aaataaagcatcgacctcaacggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattc 10494519  T
259 ccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggtga 345  Q
    ||||| ||||||||  | |||||||| |||||| |||| ||||| || |||||||| || ||||| ||||||||||| |||||||||    
10494518 ccactgatgtccacgttattcttctttttgaactcctcaacaaaataattcaccattctgttatcgaagtcctctcccccaaggtga 10494432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 46 - 345
Target Start/End: Complemental strand, 8586063 - 8585764
Alignment:
46 atcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtgatcgttgaaaaga 145  Q
    |||||||| || || ||||||||||||||||| |  ||||| ||||| |||||||||||||||||||||||||||||  |||| ||||| | |||| |||    
8586063 atcttagaatcggtaagacaactctcaacagtatttatacactcattaaaaaggtccatattgatttcctcaaacttgacacgcgtgattgatgaagaga 8585964  T
146 agtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaa 245  Q
    | ||   ||||||| ||||   ||| || |||||||||||| | |     ||||| ||||||||||||||||| || |||   ||||| | || ||||||    
8585963 aatcgacgccctcacataaataatcaatttcaatagtagtgaccaatttgaaagaaagtgtcctttttgccttttcacatgccgttcttaaccgcctcaa 8585864  T
246 ggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggtga 345  Q
     ||||||||||||  | |||| |||||  | |||||  |||| ||  |||| ||||||||||||| ||| || |||||||||||| |||| |||||||||    
8585863 agctcttgggttcttagtaatatccacattgttctttctcttaaattcctcaacaaagtagttcaacattctgttatcaaagtcccctcccccaaggtga 8585764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 24 - 186
Target Start/End: Original strand, 8616470 - 8616632
Alignment:
24 atcatctatactactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaacttt 123  Q
    |||||||| ||||||||| || |||||||| ||| | | |||||||||||||||||  ||||| || || |||||||||||||||||||||||||||||     
8616470 atcatctacactactcttctctatcttagaatcattaaaacaactctcaacagtctttatacactcgttaaaaaggtccatattgatttcctcaaactta 8616569  T
124 gcacgagtgatcgttgaaaagaagtcagtgccctcaaataaggcatctatctcaatagtagtg 186  Q
     |||||||||| | |||| |||| ||  |||||||| ||||   ||| |||||||||||||||    
8616570 acacgagtgattgatgaagagaaatcgatgccctcacataaataatcaatctcaatagtagtg 8616632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 59 - 345
Target Start/End: Complemental strand, 13333800 - 13333514
Alignment:
59 tgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtgatcgttgaaaagaagtcagtgccctc 158  Q
    |||||||||| |||||| | | |||||| ||  |||||| ||| ||||| ||||||||||| || ||||||||||| | |||| | |||||  | |||      
13333800 tgagacaactgtcaacaatattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccat 13333701  T
159 aaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttc 258  Q
    |||||| |||||||  |||| ||| ||| ||| |||||| |||||| |||||||| || |||| ||    ||||||| |||||| |||| | ||||||||    
13333700 aaataaagcatctacttcaacagtggtgacaaaagaaaaggagagtatccttttttccctctcacaggcagttctcaacctccttaaggattttgggttc 13333601  T
259 ccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggtga 345  Q
    ||||| || || ||  | |||||||| |||||| |||| ||||| ||||||||||| || ||||| ||||| ||||| |||||||||    
13333600 ccactgatatcgacgttattcttctttttgaactcctcaacaaaatagttcaccattctgttatcgaagtcttctcccccaaggtga 13333514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 345
Target Start/End: Original strand, 8646678 - 8646987
Alignment:
36 actcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtgatc 135  Q
    ||||||||||||||| |  ||| |  |||||||||||||||| |||| ||||||  |||| || |||||||||||| | ||||| || |||||||||||     
8646678 actcttgtccatcttggcatcattatgacaactctcaacagtttccaaacattcgatgaacagatccatattgattgcgtcaaatttggcacgagtgatt 8646777  T
136 gttgaaaagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctca 235  Q
    | |||||  |||||| |||| | |||||| | |||||  ||||| || |||  |  || |||||| ||||||||||||||  ||||||||   |||||||    
8646778 gatgaaataaagtcaatgccattaaataaagaatctaattcaatggtggtgcaagaagcaaaagatagtgtcctttttgctctctcgcatgccgttctca 8646877  T
236 gcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctcc 335  Q
     |||||| |||||||||| ||| ||| ||||||||||  | |||||||| || ||  | |   |||||| || |||||| ||| ||||||||||||||||    
8646878 acctccttaaggctcttgagtttccagtaatgtccaccttgttcttcttgttaaattcttgtgcaaagtggtccaccattctactatcaaagtcctctcc 8646977  T
336 accaaggtga 345  Q
     || ||||||    
8646978 tccgaggtga 8646987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 81 - 345
Target Start/End: Original strand, 8667265 - 8667529
Alignment:
81 catacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtgatcgttgaaaagaagtcagtgccctcaaataaggcatctatctcaata 180  Q
    |||||| |||||||||| |||||| || | ||||||||| || |||||||| || | |||| | |||||  | |||  |||||| ||||||| ||||| |    
8667265 catacactcattgaaaaagtccatgttaagttcctcaaatttagcacgagtaattgatgaacaaaagtcgattcccgtaaataaagcatctacctcaaca 8667364  T
181 gtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttct 280  Q
    || ||  ||| || |||||||||| ||||||||||| |||| ||    ||||||| |||||| |||| | ||||||||  ||| ||||||||| | ||||    
8667365 gtggtaacaaaagcaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttgggttctgactgatgtccactttattct 8667464  T
281 tcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggtga 345  Q
    |||| || ||| |||| ||||| ||||||||||| || ||||| |||||||| || |||||||||    
8667465 tcttttttaactcctcaacaaaatagttcaccattctgttatcgaagtcctcgcccccaaggtga 8667529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 17260023 - 17260347
Alignment:
17 ggacatcatcatctatactactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctc 116  Q
    ||||| ||||||| || || |||||||| ||||||   ||| | |||||  |||||||| ||||||| || ||||  |||||||||||||||||||| ||    
17260023 ggacaacatcatcaattctgctcttgtcaatcttaccatcactaagacacttctcaacaatctccatgcactcataaaaaaggtccatattgatttcttc 17260122  T
117 aaactttgcacgagtgatcgttgaaaagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgcc 216  Q
    |||||| ||||||||||| |  ||| | || | |   |||| |||||| || |||| ||||| | | ||  ||   | |||||| ||||||||||||||     
17260123 aaacttggcacgagtgattgacgaagaaaaattaacacccttaaataaagcgtctacctcaacattggtcacagaggcaaaagaaagtgtcctttttgct 17260222  T
217 ttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttc-ttcttcttgaacacctccacaaagtagttcaccatc 315  Q
    || || |||   ||||||| |||||| |||||| ||||||||||| ||||||||| | ||||| ||||| |||| | |||| ||||| |||| ||||||     
17260223 ttttcacatgcagttctcaacctccttaaggcttttgggttcccaataatgtccaattttttcgttctt-ttgatctcctctacaaaatagtacaccatt 17260321  T
316 ctattatcaaagtcctctccaccaag 341  Q
    ||||||||||||||||| || |||||    
17260322 ctattatcaaagtcctcacccccaag 17260347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 329
Target Start/End: Original strand, 8545600 - 8545727
Alignment:
202 agtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaa 301  Q
    |||||||||||||||||||| ||    ||||||| |||||||||||||  |||||||| |||||| ||| |  | |||||| |||||||| ||| |||||    
8545600 agtgtcctttttgccttctcacaggcagttctcaacctcctcaaggcttctgggttccgactaatatcctcattgttcttcctcttgaactccttcacaa 8545699  T
302 agtagttcaccatcctattatcaaagtc 329  Q
    |||| |||||||| || |||||||||||    
8545700 agtaattcaccattctgttatcaaagtc 8545727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 17267741 - 17267838
Alignment:
37 ctcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtgat 134  Q
    |||||||| |||||||  ||| | |||||  |||||||| ||||||| || ||||  ||||||||||||||||||||||||||||| |||||||||||    
17267741 ctcttgtcaatcttagcatcactaagacacttctcaacaatctccatgcactcatcaaaaaggtccatattgatttcctcaaacttggcacgagtgat 17267838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 8383256 - 8383146
Alignment:
23 catcatctatactactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactt 122  Q
    ||||||||| ||||||||||| ||||||||  ||||| ||||| |||||||||||||||||||| |  |  || ||||||||||||| || |||||| ||    
8383256 catcatctacactactcttgttcatcttagcatcagtaagacagctctcaacagtctccatacacttttcaaataggtccatattgagttgctcaaattt 8383157  T
123 tgcacgagtga 133  Q
     || |||||||    
8383156 ggcccgagtga 8383146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 8601756 - 8601918
Alignment:
17 ggacatcatcatctatactactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctc 116  Q
    ||||| ||||||| | ||||||||| || |||| ||  ||| | |||||||| ||||||||||| ||||| |  || || ||||||| ||||| || |||    
8601756 ggacagcatcatccacactactcttttcgatctgagcatcactaagacaactttcaacagtctctatacacttcttaaagaggtccacattgagttgctc 8601855  T
117 aaactttgcacgagtgatcgttgaaaagaagtcagtgccctcaaataaggcatctatctcaat 179  Q
    |||||| || |||||||| | ||||  ||| ||| | ||||||||||||| |||||| |||||    
8601856 aaacttggcccgagtgattgatgaatggaaatcaataccctcaaataaggaatctatgtcaat 8601918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 29582015 - 29581899
Alignment:
229 gttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagt 328  Q
    ||||||||| |||| || ||| |||||||||||||||||||||   | |||||| |||| ||| | | | ||||||| |||||||| |  ||||||||||    
29582015 gttctcagcttccttaaagcttttgggttcccactaatgtccaaattgttcttcctcttcaactcattcgcaaagtaattcaccattcggttatcaaagt 29581916  T
329 cctctccaccaaggtga 345  Q
    ||||||| || ||||||    
29581915 cctctcctcctaggtga 29581899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 345
Target Start/End: Complemental strand, 7877934 - 7877791
Alignment:
202 agtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaa 301  Q
    ||||||||||| ||| |||| |||   ||||||| |||||| | ||| || ||||| |||| |||||||||| | |||||| |||| ||| ||  ||| |    
7877934 agtgtccttttagccctctcacatgcagttctcaacctcctaagggccctcgggtttccaccaatgtccactttattcttcctcttaaactccatcacta 7877835  T
302 agtagttcaccatcctattatcaaagtcctctccaccaaggtga 345  Q
    | | ||||| ||| || |||||||||||||||||||| ||||||    
7877834 aatggttcaacattctgttatcaaagtcctctccacctaggtga 7877791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 304
Target Start/End: Original strand, 8570093 - 8570380
Alignment:
17 ggacatcatcatctatactactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctc 116  Q
    ||||| ||||||||| |||| |||| ||||||||||  ||||  |||||||| | |||||| |||||||| |  |  || |||| |||||| ||||||||    
8570093 ggacaacatcatctacactattcttttccatcttagcatcagcaagacaactattaacagtttccatacacttttcaaagaggttcatattcatttcctc 8570192  T
117 aaactttgcacgagtgatcgttgaaaagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgcc 216  Q
    |||||| || || || || | ||||  ||||||| | |||| | |||  ||||||| |||||| || |  |||  |  | | || |||||||||||||||    
8570193 aaacttggcccgggttattgatgaactgaagtcaattcccttatatatagcatctagctcaattgtggcctcagtatcatatgaaagtgtcctttttgcc 8570292  T
217 ttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagt 304  Q
     |||| ||    ||||| | ||||||||||||| ||||||||| |||||| ||| |  | |||||||||||||||  || ||||||||    
8570293 ctctcacaagctgttcttaacctcctcaaggcttttgggttcctactaatatcctcgttgttcttcttcttgaacttcttcacaaagt 8570380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 8673963 - 8673894
Alignment:
61 agacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgag 130  Q
    |||||| |||||||||| |||| ||| || |||||||| |  |||||||||||||||||||| |||||||    
8673963 agacaattctcaacagtttccaaacactcgttgaaaagattgatattgatttcctcaaacttggcacgag 8673894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 345
Target Start/End: Complemental strand, 29577846 - 29577730
Alignment:
229 gttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagt 328  Q
    ||||||||| |||| || ||| ||||||||  ||||||||||||  | |||||| |||| ||| | | |||||||| | |||||||  ||||||| ||||    
29577846 gttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggctcaccattttattatcgaagt 29577747  T
329 cctctccaccaaggtga 345  Q
    ||||||| || ||||||    
29577746 cctctcctcctaggtga 29577730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 8664161 - 8664228
Alignment:
61 agacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgag 130  Q
    ||||||||||||||||| |||| |||  | |||||||| |||||||||||||| ||| |||| |||||||    
8664161 agacaactctcaacagtttccaaaca--cgttgaaaagatccatattgatttcatcatacttggcacgag 8664228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 8664919 - 8664956
Alignment:
94 aaaaggtccatattgatttcctcaaactttgcacgagt 131  Q
    ||||||||||||||||||||||||||| | ||||||||    
8664919 aaaaggtccatattgatttcctcaaacctcgcacgagt 8664956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 37 - 345
Target Start/End: Original strand, 43744618 - 43744926
Alignment:
37 ctcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtgatcg 136  Q
    |||||||||||||| |  ||||| ||||||||||||||| | | || ||| || ||||| || ||||||||||||||||||||||| | ||||||||| |    
43744618 ctcttgtccatcttggcatcagtaagacaactctcaacaattttcaaacactcgttgaagagatccatattgatttcctcaaacttagtacgagtgattg 43744717  T
137 ttgaaaagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcag 236  Q
    ||| |||||| ||| ||||||||||||| | ||||| ||||||||| ||| |||||| |||||| | ||||||||||||  | ||||||   |||||||     
43744718 ttgtaaagaaatcaatgccctcaaataaagaatctacctcaatagtggtgacaacagcaaaagataatgtcctttttgctctttcgcatgctgttctcaa 43744817  T
237 cctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctcca 336  Q
    |||||| || ||||||||||| ||| ||||||||||  | ||||||||||| ||| ||||  | |||||||||||||||||||||||||| ||||||||     
43744818 cctccttaatgctcttgggtttccagtaatgtccaccttgttcttcttcttaaactcctctgcgaagtagttcaccatcctattatcaaaatcctctcct 43744917  T
337 ccaaggtga 345  Q
    || ||||||    
43744918 ccgaggtga 43744926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 345
Target Start/End: Original strand, 12528293 - 12528614
Alignment:
24 atcatctatactactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaacttt 123  Q
    |||||||| ||||||||||||||||||||  || || | |||||| ||||| ||||||||||| |  |  || ||||||||||| | || ||| |||||     
12528293 atcatctacactactcttgtccatcttagcatcggtcaaacaactttcaacggtctccatacacttttcaaagaggtccatattcagttgctcgaacttg 12528392  T
124 gcacgagtgatcgttgaaaagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgc 223  Q
    || |||||||| | |||  |||||||| |||||||| |||  |||||||| ||||| ||||  ||   |    | || ||||||||||| ||||||||||    
12528393 gctcgagtgattgatgagcagaagtcaatgccctcacatatagcatctatgtcaattgtagcctctgtatcgtatgaaagtgtccttttcgccttctcgc 12528492  T
224 attgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatc 323  Q
    | |  |||||||  ||||| | |||| ||| ||||||| ||||||| ||| | |||||| |||| ||| | | ||||||||  |||||||| | ||||||    
12528493 agttagttctcaatctccttagggcttttgagttcccaataatgtcaactttgttcttcctcttaaactctttcacaaagtgattcaccattcgattatc 12528592  T
324 aaagtcctctccaccaaggtga 345  Q
    |||||||||||| |||||||||    
12528593 aaagtcctctcctccaaggtga 12528614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 37 - 345
Target Start/End: Original strand, 28219720 - 28220028
Alignment:
37 ctcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtgatcg 136  Q
    ||||||||||| || |  ||||||||||| ||||||||||| | || ||| ||||||||||| ||||||||||||||||||||||| |||||||| || |    
28219720 ctcttgtccatattggcatcagtgagacacctctcaacagttttcaaacactcattgaaaagatccatattgatttcctcaaacttagcacgagtaattg 28219819  T
137 ttgaaaagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcag 236  Q
     ||||||||| ||| |||| |||||||| | ||||| |||||| || | | |||||| |||||| ||||||||||||||  ||| |||    |||||||     
28219820 atgaaaagaaatcaatgccttcaaataaagaatctacctcaatggtggcgacaacagcaaaagatagtgtcctttttgctctcttgcacgctgttctcaa 28219919  T
237 cctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctcca 336  Q
    |||||| |||||||||| ||| ||| ||||||||||  | ||||||||||| ||| ||||  | |||||||||||||||||| ||||||||||||||||     
28219920 cctccttaaggctcttgagtttccagtaatgtccaccttgttcttcttcttaaactcctctgcgaagtagttcaccatcctactatcaaagtcctctccc 28220019  T
337 ccaaggtga 345  Q
    || ||||||    
28220020 ccgaggtga 28220028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 9e-55; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 61 - 345
Target Start/End: Complemental strand, 16657859 - 16657575
Alignment:
61 agacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtgatcgttgaaaagaagtcagtgccctcaa 160  Q
    |||||| |||||||||| | |||||| ||||||||||| |||||||| |||||||||||||| ||||| ||||| | |||| | |||||| | |||| ||    
16657859 agacaattctcaacagttttcatacactcattgaaaagatccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaa 16657760  T
161 ataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttccc 260  Q
    |||| | ||||| ||||| ||| ||| ||| || ||||||||||||||| |||||| |||| |||   ||||||| ||||||||||||||||| ||||||    
16657759 ataaagaatctacctcaacagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttgagttccc 16657660  T
261 actaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggtga 345  Q
    ||| ||||||||  | |||||||| |  ||| |||| ||||||||||||||| | || ||||||||||||||||| |||||||||    
16657659 acttatgtccaccttattcttcttttgaaactcctctacaaagtagttcaccgttctgttatcaaagtcctctcccccaaggtga 16657575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 23 - 345
Target Start/End: Original strand, 14703196 - 14703518
Alignment:
23 catcatctatactactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactt 122  Q
    |||||||||  |||||||||||||||||||  ||| | ||||||||||||||| ||| || ||| ||||| |||| ||||||||| ||||| ||||||||    
14703196 catcatctactctactcttgtccatcttagcatcaataagacaactctcaacaatcttcacacactcattaaaaaagtccatattcatttcttcaaactt 14703295  T
123 tgcacgagtgatcgttgaaaagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcg 222  Q
     || | | |||||| |||| | |||||| |||  | |||||| ||||||| ||||||||| | | ||||    ||||| ||||| ||||||||| |||||    
14703296 ggccctattgatcgatgaagaaaagtcaatgcattgaaataaagcatctacctcaatagtggcgacaacttggaaagaaagtgttctttttgccctctcg 14703395  T
223 cattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattat 322  Q
    ||   ||||||||  ||||| |||||| |||| || ||||||||||||| ||| || ||  |||||||| | |  ||||||||||||||||| || ||||    
14703396 caagcggttctcaagctccttaaggcttttggatttccactaatgtccaatctgttttttctcttgaactcttgaacaaagtagttcaccattctgttat 14703495  T
323 caaagtcctctccaccaaggtga 345  Q
    | ||||||||||| || ||||||    
14703496 cgaagtcctctcccccgaggtga 14703518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 7542008 - 7542336
Alignment:
17 ggacatcatcatctatactactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctc 116  Q
    ||||| ||||||||||  | ||||||||||| ||||  ||| | ||||| ||  ||||| ||  |||||| || || ||||| |||||||| || |||||    
7542008 ggacaacatcatctatcatgctcttgtccatattagcatcaataagacagcttccaacaatcgtcatacactcgttaaaaagatccatattcatctcctc 7542107  T
117 aaactttgcacgagtgatcgttgaaaagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgcc 216  Q
    |||||| || | | |||||| |||| | |||||| |||| | |||||| | ||||| ||||||||| |   |||||   ||||| ||||  |||||||||    
7542108 aaacttggccctattgatcgatgaagaaaagtcaatgccttgaaataaagaatctacctcaatagtggcaacaacaaggaaagaaagtgatctttttgcc 7542207  T
217 ttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcc 316  Q
     |||| ||    ||||||| ||||||||||||| |||| |||||||||||||||||| | |||||  |||||||| | |  |||||||||||| |||| |    
7542208 ctctcacaagcagttctcaacctcctcaaggcttttggattcccactaatgtccactttgttctttctcttgaactcttgtacaaagtagttcgccattc 7542307  T
317 tattatcaaagtcctctccaccaaggtga 345  Q
    ||||||||||||| |||||||||||||||    
7542308 tattatcaaagtcttctccaccaaggtga 7542336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 344
Target Start/End: Complemental strand, 12258967 - 12258640
Alignment:
17 ggacatcatcatctatactactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctc 116  Q
    ||||| ||||||||| | ||||||||||| | ||||  || || ||||||||||||||||||| ||| |||||||||||||| |||| ||| ||||||||    
12258967 ggacaacatcatctacattactcttgtccgtgttagcatccgtaagacaactctcaacagtcttcatgcattcattgaaaagttccaaatttatttcctc 12258868  T
117 aaactttgcacgagtgatcgttgaaaagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgcc 216  Q
    |||||| |||||| |||| | || | | || ||| |||| ||| |||| | ||||||||||||||| |   |||||  | |||| ||||  ||||||||     
12258867 aaacttggcacgattgattgatgcagaaaaatcaatgccatcacataaagaatctatctcaatagttgcaacaacaagataagaaagtgatctttttgca 12258768  T
217 ttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcc 316  Q
     |||| ||    ||| |||  |||||||| |||||||| || ||||| || || ||| | |||||  |||||||| | || ||||||||  ||||||| |    
12258767 ctctcacaagctgttttcaatctcctcaaagctcttggatttccacttatatctactttgttctttctcttgaactcttctacaaagtaactcaccattc 12258668  T
317 tattatcaaagtcctctccaccaaggtg 344  Q
    ||||||||||||||||||| ||||||||    
12258667 tattatcaaagtcctctcctccaaggtg 12258640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 36 - 345
Target Start/End: Original strand, 43625213 - 43625522
Alignment:
36 actcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtgatc 135  Q
    ||||||||||| ||| |  ||| | |||||||||| |||||| | || ||| || |||||||| |||||||| ||||| ||||| || |||||||||||     
43625213 actcttgtccaacttggcatcaataagacaactcttaacagttttcaaacactcgttgaaaagatccatatttatttcatcaaatttggcacgagtgatt 43625312  T
136 gttgaaaagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctca 235  Q
    | ||||||||||||| | ||    ||||| | ||||| |||||||||  ||     || |||||| |||||||||||| |  ||||||||   |||||||    
43625313 gatgaaaagaagtcaataccacggaataaagaatctacctcaatagtgctgaacgaagcaaaagacagtgtcctttttcctctctcgcatgccgttctca 43625412  T
236 gcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctcc 335  Q
     ||| || | |||||||| ||| ||| |||| |||||  | ||||||||||  ||  | ||  |||||||||||||||| |||| |||||||||||||||    
43625413 accttcttatggctcttgagtttccaataatatccacattgttcttcttctcaaattcttctgcaaagtagttcaccattctatcatcaaagtcctctcc 43625512  T
336 accaaggtga 345  Q
     |||||||||    
43625513 tccaaggtga 43625522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 345
Target Start/End: Original strand, 12234488 - 12234799
Alignment:
34 ctactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtga 133  Q
    ||||| |||||||||||||  ||| | ||||||||||||||| ||| |||||| ||| | | ||| |||||||| |||||||||||||| || | | |||    
12234488 ctacttttgtccatcttagcatcactaagacaactctcaacaatcttcatacactcaataagaagatccatattcatttcctcaaacttggccctattga 12234587  T
134 tcgttgaaaagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttct 233  Q
    ||| |||| | || ||| |||| |||||||| | ||||| |||||| || |   |||||   ||||| | ||  ||||||||| |||| ||    |||||    
12234588 tcgatgaagaaaaatcaatgccttcaaataaagaatctacctcaatggttgcaacaacaaggaaagacaatgatctttttgccctctcacaagcagttct 12234687  T
234 cagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctct 333  Q
     | ||||||||||||| |||| || ||||| ||||||||| |||||||  | |||||| | |   ||| |||||| ||||| || |||||||||||||||    
12234688 taacctcctcaaggcttttggatttccactcatgtccacttttttctttctattgaactcttgagcaaggtagtttaccattctgttatcaaagtcctct 12234787  T
334 ccaccaaggtga 345  Q
    || || ||||||    
12234788 cccccgaggtga 12234799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 345
Target Start/End: Complemental strand, 16662332 - 16662050
Alignment:
63 acaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtgatcgttgaaaagaagtcagtgccctcaaat 162  Q
    ||||||||||||| ||| |||||| || || |||||| ||||||||||||| ||||||||  |||||||||  | || | |||||||| || ||||  ||    
16662332 acaactctcaacaatcttcatacactcgttaaaaaggcccatattgatttcttcaaacttgacacgagtgagtgatgtagagaagtcaatgtcctcgtat 16662233  T
163 aaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttcccac 262  Q
    ||   ||| ||||||||||  ||| | |     ||||||||||||||||| ||||| || ||    ||||||| |||||||||||||||||| |||| |     
16662232 aaataatcaatctcaatagcggtgaccaatttgaaagagagtgtccttttcgccttttcacaagaagttctcaacctcctcaaggctcttggattcctag 16662133  T
263 taatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggtga 345  Q
    | || |||||| | |||||| | || ||  | | |||||||||||||| ||| || ||||||||||||||||| || ||||||    
16662132 tgatatccactttgttcttcctattaaattctttcacaaagtagttcaacattctgttatcaaagtcctctcccccgaggtga 16662050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 345
Target Start/End: Complemental strand, 12245785 - 12245464
Alignment:
24 atcatctatactactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaacttt 123  Q
    |||||||||| |||||||||||||||| |  ||  | | |||||||||||||||||  ||||| ||||| | ||| || | ||| | |||||||||||||    
12245785 atcatctatagtactcttgtccatctttgcatccataatacaactctcaacagtctttatacaatcattaagaagatctaaattcaattcctcaaacttt 12245686  T
124 gcacgagtgatcgttgaaaagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgc 223  Q
    || ||| |||| | |||| | || ||| |||| | |||||| | ||||| ||||||||| |   |||||  ||| || ||| | ||||||||| |||| |    
12245685 gcccgattgatggatgaagaaaaatcaatgccttgaaataaagaatctacctcaatagttgcaacaacaagaaacgaaagtattctttttgccctctcac 12245586  T
224 attgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatc 323  Q
    |    |||||||  |||||||||||| |||   |  ||||||| |||| | | |||||  |||||||| |||   |||||||||| ||||| ||||||||    
12245585 aagcagttctcaatctcctcaaggcttttgaacttgcactaatatccaatttgttctttctcttgaactcctgtgcaaagtagtttaccattctattatc 12245486  T
324 aaagtcctctccaccaaggtga 345  Q
    ||| |||||||| |||||||||    
12245485 aaaatcctctcctccaaggtga 12245464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 61 - 345
Target Start/End: Complemental strand, 4678899 - 4678616
Alignment:
61 agacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtgatcgttgaaaagaagtcagtgccctcaa 160  Q
    |||||||||| |||||| |||||||| || ||||||||||||||||| |||||||||||||| |||||||| || | |||| | |||||  | |||| ||    
4678899 agacaactcttaacagtttccatacactcgttgaaaaggtccatattaatttcctcaaacttggcacgagtaatagatgaagaaaagtctattccctgaa 4678800  T
161 ataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttccc 260  Q
    |||| | ||||| ||||| ||| ||| |||  |  |||||||||||||| |||||| |||||||    ||||||| |||||| |||| | ||| ||||      
4678799 ataaagaatcta-ctcaacagtggtgacaaaggcgaaagagagtgtcctctttgccctctcgcaggcagttctcaacctccttaagggttttgcgttctt 4678701  T
261 actaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccaccaaggtga 345  Q
    ||||||||||||  | |||||||| |||||| |||| ||||||||||||||||| || |||||||||||||||||||| ||||||    
4678700 actaatgtccacattattcttctttttgaactcctctacaaagtagttcaccattctgttatcaaagtcctctccacctaggtga 4678616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 345
Target Start/End: Original strand, 15594823 - 15595144
Alignment:
24 atcatctatactactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaacttt 123  Q
    ||||| || ||||||||| | ||||||||  |||   ||||||||||||||  ||| |||||| || || |||| |||||| |||||||| ||||||||     
15594823 atcatttacactactcttattcatcttagcatcatcaagacaactctcaactatcttcatacaatccttaaaaaagtccatgttgatttcttcaaacttg 15594922  T
124 gcacgagtgatcgttgaaaagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgc 223  Q
    | |||||| | || ||||||||||||| | || | ||||||   ||||| |||||| |||||| ||  || ||||||||||  |||||||||| | ||||    
15594923 gaacgagtaaccgatgaaaagaagtcaataccgttaaataaacaatctacctcaatggtagtgacagtagtaaaagagagtaccctttttgccctttcgc 15595022  T
224 attgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatc 323  Q
    |    |||||||  ||||||||||| |||||||||||| |||| |||||| | |||||| |||||||  ||| | |||||||||| ||||| || |||||    
15595023 acgcagttctcaatctcctcaaggcccttgggttcccagtaatatccactttgttcttcgtcttgaattcctgcgcaaagtagttgaccattctgttatc 15595122  T
324 aaagtcctctccaccaaggtga 345  Q
    |||||||||||| |||||||||    
15595123 aaagtcctctcctccaaggtga 15595144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 334
Target Start/End: Complemental strand, 34467089 - 34466862
Alignment:
99 gtccatattgatttcctcaaactttgcacgagtgatcgttgaaaagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaa 198  Q
    |||||||||||||||||||||||| ||||||||||| |  |||  ||||||| |  ||||| |||| | |||||| |||| ||||| |        | ||    
34467089 gtccatattgatttcctcaaacttggcacgagtgattgacgaatggaagtcaattacctcatataaagaatctatttcaacagtagcg--------acaa 34466998  T
199 gagagtgtcctttttgccttctcgcattgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctcca 298  Q
     |||||||||| ||||| ||||||||    ||||||| ||||||||| ||||| ||||| |||||||| |||    | | |||| |||||||| |||       
34466997 aagagtgtcctctttgcattctcgcacgcagttctcaacctcctcaaagctctagggtttccactaatatccttattatgcttcctcttgaactcctttg 34466898  T
299 caaagtagttcaccatcctattatcaaagtcctctc 334  Q
    |||||| |||| |||| |||||||||||||||||||    
34466897 caaagtggttcgccattctattatcaaagtcctctc 34466862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 52549353 - 52549293
Alignment:
62 gacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactt 122  Q
    ||||||| |||||| ||| |||||| || || |||||||||||||| ||||||||||||||    
52549353 gacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaaactt 52549293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 335
Target Start/End: Original strand, 30775041 - 30775352
Alignment:
24 atcatctatactactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaacttt 123  Q
    |||||||| |||||||||||| | ||| || ||||| |||||||||||||||||||  ||||| ||||| |||||||||||||||||||||||||||||     
30775041 atcatctacactactcttgtctacctttgaatcagtaagacaactctcaacagtctgtatacactcattaaaaaggtccatattgatttcctcaaacttg 30775140  T
124 gcacgagtgatcgttgaaaagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgc 223  Q
     |||||||||| | |||| | |||||| || | | ||||||   ||||||||||| |   |||  ||     || |||||||||||||||||||| || |    
30775141 acacgagtgattgatgaagaaaagtcaatgtcttgaaataaattatctatctcaacaaatgtgagaaacttgaaggagagtgtcctttttgccttttcac 30775240  T
224 attgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatc 323  Q
    ||   ||||||| |   ||||| |||||||| |||||  ||||||||||  | |||||| |||| ||  |||| |||||||| |||| ||| || |||||    
30775241 atgcagttctcaactgtctcaaagctcttggattcccggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtaattcaacattctgttatc 30775340  T
324 aaagtcctctcc 335  Q
    ||||||||||||    
30775341 aaagtcctctcc 30775352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 344
Target Start/End: Complemental strand, 9336270 - 9335950
Alignment:
24 atcatctatactactcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaacttt 123  Q
    |||||| ||| |||||||||  ||||| || ||  |||||||  | |||||| | | |||||| |||||||||| |||||| || | ||||||||| ||     
9336270 atcatcaatattactcttgtatatctttgaatccctgagacaggtgtcaacaatattcatacactcattgaaaaagtccatgttaagttcctcaaatttg 9336171  T
124 gcacgagtgatcgttgaaaagaagtcagtgccctcaaataaggcatctatctcaatagtagtgtcaacagaaaaagagagtgtcctttttgccttctcgc 223  Q
    ||||||||||| | |||| | |||||  | |||  |||||| ||||||| ||||| ||| ||  ||| || |||||| ||| ||||||||||| |||| |    
9336170 gcacgagtgattgatgaagaaaagtcgattcccataaataaagcatctacctcaacagtggtaacaaaagcaaaagacagtatcctttttgccctctcac 9336071  T
224 attgggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatc 323  Q
    |    ||||||| |||||| |||| | ||||||||    | ||||||||| | |||||||| || ||| | |||||||| ||||| ||||| || |||||    
9336070 aggcagttctcaacctccttaaggattttgggttctgcttgatgtccactttattcttcttttttaactcttccacaaaatagttaaccattctgttatc 9335971  T
324 aaagtcctctccaccaaggtg 344  Q
    ||||||||| || ||||||||    
9335970 aaagtcctcgcctccaaggtg 9335950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 241 - 338
Target Start/End: Original strand, 35132454 - 35132551
Alignment:
241 ctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaagtagttcaccatcctattatcaaagtcctctccacc 338  Q
    ||||||||| |||  |||||||||||||| ||| | |||||  |||||||| | |  ||||||||||||||||| || ||||||||||||||||||||    
35132454 ctcaaggcttttgaattcccactaatgtctactttgttctttctcttgaactcttgtacaaagtagttcaccattctgttatcaaagtcctctccacc 35132551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 35132259 - 35132344
Alignment:
37 ctcttgtccatcttagagtcagtgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactt 122  Q
    ||||||||||||||||  ||| ||||||||||||| || || | |||||| ||||| ||||||||   ||| ||||||||||||||    
35132259 ctcttgtccatcttagcatcaatgagacaactctctacggtattcatacactcattaaaaaggtctgcattcatttcctcaaactt 35132344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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