View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16227_high_8 (Length: 347)

Name: NF16227_high_8
Description: NF16227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16227_high_8
NF16227_high_8
[»] chr7 (7 HSPs)
chr7 (16-347)||(13474891-13475222)
chr7 (16-343)||(11657642-11657970)
chr7 (83-347)||(22612416-22612680)
chr7 (16-87)||(22611423-22611494)
chr7 (256-347)||(48378930-48379020)
chr7 (256-347)||(13773830-13773921)
chr7 (252-291)||(37943953-37943992)
[»] chr3 (10 HSPs)
chr3 (16-347)||(21100449-21100778)
chr3 (16-318)||(5941489-5941790)
chr3 (16-276)||(19186880-19187139)
chr3 (16-324)||(17793395-17793702)
chr3 (16-324)||(19101835-19102142)
chr3 (16-285)||(15958028-15958296)
chr3 (259-347)||(17959161-17959249)
chr3 (256-347)||(14057675-14057766)
chr3 (252-316)||(14479496-14479560)
chr3 (256-329)||(16942074-16942147)
[»] chr2 (5 HSPs)
chr2 (16-291)||(24788580-24788856)
chr2 (16-347)||(44583759-44584081)
chr2 (24-291)||(23651639-23651893)
chr2 (16-274)||(21553786-21554042)
chr2 (254-291)||(13362070-13362107)
[»] scaffold0166 (1 HSPs)
scaffold0166 (16-278)||(3417-3680)
[»] chr5 (3 HSPs)
chr5 (16-278)||(24760920-24761183)
chr5 (254-315)||(23950022-23950082)
chr5 (252-316)||(24829911-24829974)
[»] scaffold0145 (1 HSPs)
scaffold0145 (16-291)||(14720-14996)
[»] chr4 (7 HSPs)
chr4 (16-324)||(16282719-16283028)
chr4 (16-329)||(11558457-11558769)
chr4 (10-276)||(12230906-12231171)
chr4 (16-291)||(8808797-8809072)
chr4 (16-216)||(18218218-18218418)
chr4 (258-347)||(17338817-17338906)
chr4 (258-291)||(11332613-11332646)
[»] chr6 (4 HSPs)
chr6 (176-345)||(15118940-15119108)
chr6 (259-347)||(20145859-20145948)
chr6 (259-347)||(22186891-22186980)
chr6 (252-316)||(7680599-7680663)
[»] scaffold0218 (1 HSPs)
scaffold0218 (256-347)||(16533-16624)
[»] scaffold0091 (1 HSPs)
scaffold0091 (256-347)||(31185-31276)
[»] scaffold0063 (1 HSPs)
scaffold0063 (256-347)||(26065-26156)
[»] chr1 (1 HSPs)
chr1 (256-347)||(51624858-51624948)
[»] scaffold0061 (2 HSPs)
scaffold0061 (261-347)||(16665-16751)
scaffold0061 (261-347)||(25723-25809)
[»] scaffold0054 (1 HSPs)
scaffold0054 (254-347)||(71282-71376)
[»] scaffold0003 (1 HSPs)
scaffold0003 (256-347)||(132719-132810)
[»] chr8 (2 HSPs)
chr8 (143-290)||(17883280-17883425)
chr8 (254-290)||(26859181-26859217)
[»] scaffold0601 (1 HSPs)
scaffold0601 (254-318)||(4127-4191)


Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 13474891 - 13475222
Alignment:
Q  16 ataaataaagagtcgtgggtgtagaaagtaagattataataaatgggggaggggagaagtaaaagagtagtgcatagaaaaggaatacaattatagaaaa 115  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  13474891 ataaataaagagtcgtggatgtagaaagtaagattataataagtgggggaggggagaagtaaaagagtagtgcataggaaatgaatacaattatagaaaa 13474990  T
Q  116 cagtgagcccaaatataaataggagtattagggattagaaatcagttttgctaattagaaaaaaggaagaagaaaaccatagggagagaagcggaaccct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||    
T  13474991 cagtgagcccaaatataaataggagtattagggattagaaatcagttttgctaattagagaaaaggaagaagaaaaccagagggagagaagctgaaccct 13475090  T
Q  216 agtgcagcaacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgta 315  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||  || |||||||||||||||||||||| ||||||||| |||||||||||||    
T  13475091 agtgcagcaacatcgaggcaaatcgaaggtttctacggattcgaggtaaagggaagaatctcttcatctctagggtttaatattctattgtggggctgta 13475190  T
Q  316 aaggggttatagtaagagtgttgttatgatgg 347  Q
    ||||||||||||||||||||||||||||||||    
T  13475191 aaggggttatagtaagagtgttgttatgatgg 13475222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 343
Target Start/End: Complemental strand, 11657970 - 11657642
Alignment:
Q  16 ataaataaagagtcgtgggtgtagaaagtaagatt-ataataaatgggggaggggagaagtaaaagagtagtgcatagaaaaggaatacaattatagaaa 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||  ||| ||||||| ||||||||||  |    
T  11657970 ataaataaagagtcgtgggtgtagaaagtaagatttataataagtgggggaggggagaagtaaaagagtagtgtgtaggaaaggaagacaattatagcga 11657871  T
Q  115 acagtgagcccaaatataaataggagtattagggattagaaatcagttttgctaattagaaaaaaggaagaagaaaaccatagggagagaagcggaaccc 214  Q
    | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||| |||||||||  | ||||||||||| |||||||    
T  11657870 atagtgagcccaaatataaataggaatattagggattagaaatcagttttgctaatcagagaaaagggagaagaaaagaagagggagagaagaggaaccc 11657771  T
Q  215 tagtgcagcaacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgt 314  Q
    ||||||||| ||||| || |||| | |||||||||| |||||||||||||| | |||||||||||||| |||||||| ||||||| ||||||| ||||||    
T  11657770 tagtgcagctacatcaagccaaaccaaaggtttctacggattcgaggtaagggtgagaatctcttcatttctagggtttaatattttgttgtgaggctgt 11657671  T
Q  315 aaaggggttatagtaagagtgttgttatg 343  Q
    |||||||||| ||||  ||||||||||||    
T  11657670 aaaggggttacagtagaagtgttgttatg 11657642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 83 - 347
Target Start/End: Original strand, 22612416 - 22612680
Alignment:
Q  83 tagtgcatagaaaaggaatacaattatagaaaacagtgagcccaaatataaataggagtattagggattagaaatcagttttgctaattagaaaaaagga 182  Q
    |||||| ||| ||||||| ||||||||||  ||  |||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||| ||||||     
T  22612416 tagtgcgtaggaaaggaagacaattatagcgaatggtgagcccaaatataaataggaatattagggattagaaatcagtttttctaatcagagaaaaggg 22612515  T
Q  183 agaagaaaaccatagggagagaagcggaaccctagtgcagcaacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaatctcttcat 282  Q
    ||||||||| || |  ||||||||||||||||||||||| |||||||||| |||| |||||||||||| |||||||||||||| ||||||||||||||||    
T  22612516 agaagaaaagcagacagagagaagcggaaccctagtgcaacaacatcgagccaaaccgaaggtttctacggattcgaggtaagggggagaatctcttcat 22612615  T
Q  283 ctctagggtataatattctgttgtggggctgtaaaggggttatagtaagagtgttgttatgatgg 347  Q
    ||||||||| |||||||   |||||||| |||||||||||||||||| |||||||||||||||||    
T  22612616 ctctagggtttaatattggcttgtggggatgtaaaggggttatagtaggagtgttgttatgatgg 22612680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 22611423 - 22611494
Alignment:
Q  16 ataaataaagagtcgtgggtgtagaaagtaagattataataaatgggggaggggagaagtaaaagagtagtg 87  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22611423 ataaataaagagtcgtgggtgtagaaagtaagattataataagtgggggaggggagaagtaaaagagtagtg 22611494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 48379020 - 48378930
Alignment:
Q  256 tcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgtaaaggggttatagtaagagtgttgttatgatgg 347  Q
    |||||||||| ||||||||||||||||||||||||| ||||||| |||||| ||| ||||||||||||| |||| |||||||||||||||||    
T  48379020 tcgaggtaag-gggagaatctcttcatctctagggtttaatattttgttgtagggttgtaaaggggttagagtatgagtgttgttatgatgg 48378930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 13773830 - 13773921
Alignment:
Q  256 tcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgtaaaggggttatagtaagagtgttgttatgatgg 347  Q
    |||||||||| |  |||||||||||||||||||||| || |||| |||||| ||| |||||||||||||||||| |||||||||||||||||    
T  13773830 tcgaggtaagggatagaatctcttcatctctagggtttattattttgttgtagggttgtaaaggggttatagtatgagtgttgttatgatgg 13773921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 37943953 - 37943992
Alignment:
Q  252 ggattcgaggtaagagggagaatctcttcatctctagggt 291  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  37943953 ggattcaaggtaagagggagaatctattcatctctagggt 37943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 168; Significance: 5e-90; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 21100449 - 21100778
Alignment:
Q  16 ataaataaagagtcgtgggtgtagaaagtaagattataataaatgggggaggggagaagtaaaagagtagtgcatagaaaaggaatacaattatagaaaa 115  Q
    |||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||| ||| ||  ||||||| |||||||||| ||     
T  21100449 ataaataaagagtcgtgggtgtggaaagtaagattttaataagtgggggaggggagaagtaaaagagtactgcgtaagaaaggaagacaattatagcaat 21100548  T
Q  116 cagtgagcccaaatataaataggagtattagggattagaaatcagttttgctaattagaaaaaaggaagaagaaaaccatagggagagaagcggaaccct 215  Q
      | ||||||||||||||||| || |||||||||||| |||||| ||||||| || |||  ||||| |||||| || ||  |||||||||||||||||||    
T  21100549 t-gcgagcccaaatataaataagaatattagggattaaaaatcaattttgctgatcagagtaaagggagaagagaagcagggggagagaagcggaaccct 21100647  T
Q  216 agtgcagcaacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgta 315  Q
    ||||||||||||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||| |||||||| ||||||| ||||||||| |||||    
T  21100648 agtgcagcaacatcgagccaaaccgaaggtttctatggatttgaggtaag-gggagaatctcttcatatctagggtttaatattttgttgtgggtctgta 21100746  T
Q  316 aaggggttatagtaagagtgttgttatgatgg 347  Q
    ||| ||||| || | |||||||||||| ||||    
T  21100747 aagaggttagaggatgagtgttgttataatgg 21100778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 5941489 - 5941790
Alignment:
Q  16 ataaataaagagtcgtgggtgtagaaagtaagattataataaatgggggaggggagaagtaaaagagtagtgcatagaaaaggaatacaattatagaaaa 115  Q
    |||||||||||||| |||||||||||||||||||| |||||| || || ||||| |||||||||||||| |||||| ||||||||  |||||||||| ||    
T  5941489 ataaataaagagtcatgggtgtagaaagtaagattttaataagtgaggaaggggggaagtaaaagagtattgcataaaaaaggaaggcaattatagagaa 5941588  T
Q  116 cagtgagcccaaatataaataggagtattagggattagaaatcagttttgctaattagaaaaaaggaagaagaaaaccatagggagagaagcggaaccct 215  Q
     |||||||| | ||||||||| || ||||||||||||||||||||||||||| || ||| |||||| |||||| || |||||||||||||||| ||||||    
T  5941589 tagtgagcctagatataaatatgaatattagggattagaaatcagttttgctgatcagagaaaagggagaagagaagcatagggagagaagcgaaaccct 5941688  T
Q  216 agtgcagcaacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgta 315  Q
    |||| |||||||||| | |||| | |||||||||||||||| |||||||| | |||||||| ||||||| |||||| ||||||| |||||||||||| ||    
T  5941689 agtgtagcaacatcgggtcaaaccaaaggtttctatggatttgaggtaagggagagaatctattcatctatagggt-taatattttgttgtggggctata 5941787  T
Q  316 aag 318  Q
    |||    
T  5941788 aag 5941790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 16 - 276
Target Start/End: Complemental strand, 19187139 - 19186880
Alignment:
Q  16 ataaataaagagtcgtgggtgtagaaagtaagattataataaatgggggaggggagaagtaaaagagtagtgcatagaaaaggaatacaattatagaaaa 115  Q
    |||| ||||||| ||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||  ||| ||||||| ||||||||||  ||    
T  19187139 ataattaaagagacgtgggtgtagaaagcaaaattataataagtgggggaggggagaagtaaaagagtagtgtgtaggaaaggaagacaattatagcgaa 19187040  T
Q  116 cagtgagcccaaatataaataggagtattagggattagaaatcagttttgctaattagaaaaaaggaagaagaaaaccatagggagagaagcggaaccct 215  Q
     | |||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| |||||| ||||||||| || ||||||||||||||||||||    
T  19187039 taatgagccaaaatataaataggaatattagggattagaaatcagttttgctaa-tagagaaaagggagaagaaaagcagagggagagaagcggaaccct 19186941  T
Q  216 agtgcagcaacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaatct 276  Q
    || |||||||||||||| |||| |||||||||||| ||||||||||||||  |||||||||    
T  19186940 agggcagcaacatcgagccaaaccgaaggtttctacggattcgaggtaaggaggagaatct 19186880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 17793702 - 17793395
Alignment:
Q  16 ataaataaagagtcgtgggtgtagaaagtaagattataataaatgggggaggggagaagtaaaagagtagtgcatagaaaaggaatacaattatagaaaa 115  Q
    |||||||||||||  ||||||||||||||||||||| ||||| ||||| |||||| ||||||||||||||||||||| ||| ||| ||||||||||  ||    
T  17793702 ataaataaagagttctgggtgtagaaagtaagattacaataagtggggaaggggataagtaaaagagtagtgcataggaaaagaagacaattatagtgaa 17793603  T
Q  116 cagtgagcccaaatataaataggagtattagggattagaaatcagttttgctaattagaaaaaaggaagaagaaaaccatagggagagaagcggaaccct 215  Q
     ||||||| ||||||||||||||| |||||||| ||| | || ||||||||| | |||| |||||| ||||||| | || ||| |||||||||||||| |    
T  17793602 tagtgagcgcaaatataaataggaatattaggggttacatataagttttgctga-tagagaaaagggagaagaatagcagaggaagagaagcggaaccgt 17793504  T
Q  216 agtgcagcaacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgta 315  Q
    ||||||||||||||||| |||| ||||||||||||  ||||||||||||| |||||||||| |||||||||||||| ||   || | ||||||||||||     
T  17793503 agtgcagcaacatcgagccaaaccgaaggtttctacagattcgaggtaagggggagaatctattcatctctagggtttatgtttttattgtggggctgtg 17793404  T
Q  316 aaggggtta 324  Q
    ||| |||||    
T  17793403 aagaggtta 17793395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 19102142 - 19101835
Alignment:
Q  16 ataaataaagagtcgtgggtgtagaaagtaagattataataaatgggggaggggagaagtaaaagagtagtgcatagaaaaggaatacaattatagaaaa 115  Q
    |||||||||||||  ||||||||||||||||||||| ||||| ||||| |||||| ||||||||||||||||||||| ||| ||| ||||||||||  ||    
T  19102142 ataaataaagagttctgggtgtagaaagtaagattacaataagtggggaaggggataagtaaaagagtagtgcataggaaaagaagacaattatagtgaa 19102043  T
Q  116 cagtgagcccaaatataaataggagtattagggattagaaatcagttttgctaattagaaaaaaggaagaagaaaaccatagggagagaagcggaaccct 215  Q
     ||||||| ||||||||||||||| |||||||| ||| | || ||||||||| | |||| |||||| ||||||| | || ||| |||||||||||||| |    
T  19102042 tagtgagcgcaaatataaataggaatattaggggttacatataagttttgctga-tagagaaaagggagaagaatagcagaggaagagaagcggaaccgt 19101944  T
Q  216 agtgcagcaacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgta 315  Q
    ||||||||||||||||| |||| ||||||||||||  ||||||||||||| |||||||||| |||||||||||||| ||   || | ||||||||||||     
T  19101943 agtgcagcaacatcgagccaaaccgaaggtttctacagattcgaggtaagggggagaatctattcatctctagggtttatgtttttattgtggggctgtg 19101844  T
Q  316 aaggggtta 324  Q
    ||| |||||    
T  19101843 aagaggtta 19101835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 15958028 - 15958296
Alignment:
Q  16 ataaataaagagtcgtgggtgtagaaagtaagattataataaatgggggaggggagaagtaaaagagtagtgcatagaaaaggaatacaattatagaaaa 115  Q
    |||||||| | ||||  ||||||||||||||||||  ||||  ||||| | |||||||||||||  |||| |||||  ||||||    |||||||   ||    
T  15958028 ataaataaggggtcggaggtgtagaaagtaagattgaaatatgtgggg-atgggagaagtaaaattgtagcgcatatgaaaggagggaaattataacgaa 15958126  T
Q  116 cagtgagcccaaatataaataggagtattagggattagaaatcagttttgctaattagaaaaaaggaagaagaaaaccatagggagagaagcggaaccct 215  Q
     ||||||||||  |||||||| || ||||||||||||||||| |||||||||||| ||| |||||  | |||| ||  | | ||||| | ||| ||| ||    
T  15958127 tagtgagcccatgtataaataagaatattagggattagaaattagttttgctaatcagagaaaagagataagagaagaagaaggagaaatgcgaaactct 15958226  T
Q  216 agtgcagcaacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaatctcttcatctc 285  Q
    |||||||| ||||  || | || |||||||||||| ||||| |||||||| |||||||||| ||||||||    
T  15958227 agtgcagcgacatttagtccaaccgaaggtttctacggatttgaggtaagggggagaatctattcatctc 15958296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 259 - 347
Target Start/End: Original strand, 17959161 - 17959249
Alignment:
Q  259 aggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgtaaaggggttatagtaagagtgttgttatgatgg 347  Q
    ||||||| ||||||||||||||||||||||||| ||||||| || |   ||| ||||||||||||| |||| |||||||||||||||||    
T  17959161 aggtaagggggagaatctcttcatctctagggtttaatattttgattaagggttgtaaaggggttagagtatgagtgttgttatgatgg 17959249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 14057675 - 14057766
Alignment:
Q  256 tcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgtaaaggggttatagtaagagtgttgttatgatgg 347  Q
    |||||||||  ||||||||||||||||||||||||| || |||| || ||| ||| |||| |||||||  |||| |||||||||||| ||||    
T  14057675 tcgaggtaaaggggagaatctcttcatctctagggtttattattttgctgtagggttgtagaggggttggagtatgagtgttgttatcatgg 14057766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 14479496 - 14479560
Alignment:
Q  252 ggattcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgtaa 316  Q
    |||||||||||||| |||||||||| |||||||||||||| || ||||   ||||||||||||||    
T  14479496 ggattcgaggtaagggggagaatcttttcatctctagggtttattatttcattgtggggctgtaa 14479560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 16942074 - 16942147
Alignment:
Q  256 tcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgtaaaggggttatagta 329  Q
    ||||||||||  |||||||||||||||||||||||| || |||| || | | ||| ||||||||||||| ||||    
T  16942074 tcgaggtaaggcggagaatctcttcatctctagggtttattattttgctatagggttgtaaaggggttagagta 16942147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 24788856 - 24788580
Alignment:
Q  16 ataaataaagagtcgtgggtgtagaaagtaagattataataaatgggggaggggagaagtaaaagagtagtgcatagaaaaggaatacaattatagaaaa 115  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||  ||||||| ||||||||||  ||    
T  24788856 ataaataaagagtcgtgggtgtagaaagcaagattataataagtgggggaggggagaagtaaaagagtagtgcgtatgaaaggaagacaattatagcgaa 24788757  T
Q  116 cagtgagcccaaatataaataggagtattagggattagaaatcagttttgctaattaga-aaaaaggaagaagaaaaccatagggagagaagcggaaccc 214  Q
     ||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||  || ||||||| ||||||||| || |||||||||||||||||||    
T  24788756 tagtgagcccaaatataaataggaatattagggattagaaattagttttgctgatcggagaaaaagggagaagaaaaacaaagggagagaagcggaaccc 24788657  T
Q  215 tagtgcagcaacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaatctcttcatctctagggt 291  Q
    |||||||||||| || || |||| |||||||||||| |||||||||||||| |||| ||| | ||||||||||||||    
T  24788656 tagtgcagcaacttctagccaaaccgaaggtttctacggattcgaggtaagggggataatatattcatctctagggt 24788580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 44583759 - 44584081
Alignment:
Q  16 ataaataaagagtcgtgggtgtagaaagtaagattataataaatgggggaggggagaagtaaaagagtagtgcatagaaaaggaatacaattatagaaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||| |||  |||| ||||||||||||||||||||||  ||| |||| || ||||||||||  ||    
T  44583759 ataaataaagagtcgtgggtgtagaaagtaagattataacaaaaaggggtggggagaagtaaaagagtagtgtgtaggaaagcaagacaattatagcgaa 44583858  T
Q  116 cagtgagcccaaatataaataggagtattagggattagaaatcagttttgctaattagaaaaaaggaagaagaaaaccatagggagagaagcggaaccct 215  Q
     | ||||||||||||||||||||| |||||||||||||||||||||||||||         ||||| ||| ||||| || | |||||||||||||| |||    
T  44583859 taatgagcccaaatataaataggaatattagggattagaaatcagttttgct---------aaagggagaggaaaagcagatggagagaagcggaatcct 44583949  T
Q  216 agtgcagcaacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgta 315  Q
    |||||||||||||| || |||| | |||||||||| ||||| |||||||| |||||||||||| | |||||||||| |||||||||||||||||| ||||    
T  44583950 agtgcagcaacatcaagtcaaaccaaaggtttctacggatttgaggtaagggggagaatctctccgtctctagggtttaatattctgttgtggggatgta 44584049  T
Q  316 aaggggttatagtaagagtgttgttatgatgg 347  Q
    || | |||||||||  ||||||||||||||||    
T  44584050 aatgagttatagtagcagtgttgttatgatgg 44584081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 24 - 291
Target Start/End: Original strand, 23651639 - 23651893
Alignment:
Q  24 agagtcgtgggtgtagaaagtaagattataataaatgggggaggggagaagtaaaagagtagtgcatagaaaaggaatacaattatagaaaacagtgagc 123  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||| |||| ||| |||||||||| |  ||||| |    
T  23651639 agagtcgtgggtgtagaaagtaagattttaataagtgggggaggggagaagtaaaagagtagtgcgtagtaaagaaatgcaattatagagattagtgaac 23651738  T
Q  124 ccaaatataaataggagtattagggattagaaatcagt-tttgctaattagaaaaaaggaagaagaaaaccatagggagagaagcggaaccctagtgcag 222  Q
    ||| |||||||||||| ||||||||||||||||||||| || ||| || |||      ||||        || ||| ||||||||||||||||| |||||    
T  23651739 ccatatataaataggaatattagggattagaaatcagtattggctgatcaga------gaag--------caaaggtagagaagcggaaccctaatgcag 23651824  T
Q  223 caacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaatctcttcatctctagggt 291  Q
    |||||||||| ||||  |||||| ||||  ||||||||||||| |||||||||| ||||||||||||||    
T  23651825 caacatcgagccaaactgaaggtatctacagattcgaggtaagggggagaatctattcatctctagggt 23651893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 274
Target Start/End: Original strand, 21553786 - 21554042
Alignment:
Q  16 ataaataaagagtcgtgggtgtagaaagtaagattataataaatgggggaggggagaagtaaaagagtagtgcatagaaaaggaatacaattatagaaaa 115  Q
    |||||||||||||||  |||||||| ||||||||   ||||  ||||||||||||||| ||||| |||||  | ||| ||||||  |  |  |||   ||    
T  21553786 ataaataaagagtcggaggtgtagagagtaagatctaaatacgtgggggaggggagaattaaaatagtagcacgtaggaaaggagga--accataacgaa 21553883  T
Q  116 cagtgagcccaaatataaataggagtattagggattagaaatcagttttgctaattagaaaaaaggaagaagaaaaccatagggagagaagcggaaccct 215  Q
     |||||| |||  |||||||| || ||||||||||||||||||||||||| | || |||  ||||  |||||| || || | |||||||| |||||| ||    
T  21553884 tagtgagtccatgtataaataagaatattagggattagaaatcagttttgttgatcagagtaaagagagaagagaagcagaaggagagaaacggaactct 21553983  T
Q  216 agtgcagcaacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaat 274  Q
    |||||| | ||| |||| |||| |||||||||||| |||||||||||||| ||||||||    
T  21553984 agtgcaacgacaccgagccaaaacgaaggtttctacggattcgaggtaagggggagaat 21554042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 13362107 - 13362070
Alignment:
Q  254 attcgaggtaagagggagaatctcttcatctctagggt 291  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  13362107 attcaaggtaagggggagaatctcttcatctctagggt 13362070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 3680 - 3417
Alignment:
Q  16 ataaataaagagtcgtgggtgtagaaagtaagattataataaatgggggaggggagaagtaaaagagtagtgcatagaaaaggaatacaattatagaaaa 115  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||| | |||||||||||||||||||| ||| |||| ||   ||||||||| |     
T  3680 ataaataaagagtcgtgggtgtagaaagtaagattttaataagtgggggacgagagaagtaaaagagtagtgcgtaggaaagaaaggaaattatagagat 3581  T
Q  116 cagtgagcccaaatataaataggagtattagggattagaaatcagtttt-gctaattagaaaaaaggaagaagaaaaccatagggagagaagcggaaccc 214  Q
     ||||||| || |||||||||||| ||||| |||||||||||||||||| ||| || ||| |||||| ||||||  | ||||||||||||| | ||||||    
T  3580 tagtgagctcatatataaataggaatattatggattagaaatcagttttggctgatcagagaaaagggagaagaggagcatagggagagaacctgaaccc 3481  T
Q  215 tagtgcagcaacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaatctct 278  Q
    ||||||| ||||| |||| |||| |||||||||||| |||||||||||||||||| ||||||||    
T  3480 tagtgcaacaacaccgagccaaaccgaaggtttctaaggattcgaggtaagagggggaatctct 3417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 24761183 - 24760920
Alignment:
Q  16 ataaataaagagtcgtgggtgtagaaagtaagattataataaatgggggaggggagaagtaaaagagtagtgcatagaaaaggaatacaattatagaaaa 115  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||| | |||||||||||||||||||| ||| |||| ||   ||||||||| |     
T  24761183 ataaataaagagtcgtgggtgtagaaagtaagattttaataagtgggggacgagagaagtaaaagagtagtgcgtaggaaagaaaggaaattatagagat 24761084  T
Q  116 cagtgagcccaaatataaataggagtattagggattagaaatcagtttt-gctaattagaaaaaaggaagaagaaaaccatagggagagaagcggaaccc 214  Q
     ||||||| || |||||||||||| ||||| |||||||||||||||||| ||| || ||| |||||| ||||||  | ||||||||||||| | ||||||    
T  24761083 tagtgagctcatatataaataggaatattatggattagaaatcagttttggctgatcagagaaaagggagaagaggagcatagggagagaacctgaaccc 24760984  T
Q  215 tagtgcagcaacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaatctct 278  Q
    ||||||| ||||| |||| |||| |||||||||||| |||||||||||||||||| ||||||||    
T  24760983 tagtgcaacaacaccgagccaaaccgaaggtttctaaggattcgaggtaagagggggaatctct 24760920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 315
Target Start/End: Original strand, 23950022 - 23950082
Alignment:
Q  254 attcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgta 315  Q
    |||||||||||| |||||||||| |||||||||||||| |||| ||||||| ||||||||||    
T  23950022 attcgaggtaagggggagaatcttttcatctctagggtttaattttctgtt-tggggctgta 23950082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 24829911 - 24829974
Alignment:
Q  252 ggattcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgtaa 316  Q
    |||||||||||||| ||||||||| ||||||||||||||| || ||||   ||||||||||||||    
T  24829911 ggattcgaggtaag-gggagaatcgcttcatctctagggtttattatttcattgtggggctgtaa 24829974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 14996 - 14720
Alignment:
Q  16 ataaataaagagtcgtgggtgtagaaagtaagattataataaatgggggaggggagaagtaaaagagtagtgcatagaaaaggaatacaattatagaaaa 115  Q
    |||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||| |||  ||   |||| |||| |     
T  14996 ataaataaagagtcgtgggtgtagaaagtaagtttttaataagtgggggaggggagaagtaaaagagtagtgcataggaaataaaggtaattctagatat 14897  T
Q  116 cagtgagcccaaatataaataggagtattagggattagaaatcagttttg-ctaattagaaaaaaggaagaagaaaaccatagggagagaagcggaaccc 214  Q
     ||||||||||  |||| |||||| ||||||||||||||||||||||||| ||||| ||| |||||| |||| | || || || || ||||| |||||||    
T  14896 tagtgagcccatttatatataggaatattagggattagaaatcagttttggctaataagagaaaagggagaaaagaagcaaagagaaagaagtggaaccc 14797  T
Q  215 tagtgcagcaacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaatctcttcatctctagggt 291  Q
    || ||||||||||||||| |||| | || ||||||| || ||||||||||| |||||||||| ||||||| ||||||    
T  14796 tactgcagcaacatcgagtcaaaccaaatgtttctacgggttcgaggtaagggggagaatctattcatctatagggt 14720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 16282719 - 16283028
Alignment:
Q  16 ataaataaagagtcgtgggtgtagaaagtaagattataataaatgggggaggggagaagtaaaagagtagtgcatagaaaaggaatacaattatagaaaa 115  Q
    |||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||| |||  ||   |||| |||| |     
T  16282719 ataaataaagagtcgtgggtgtagaaagtaagtttttaataagtgggggaggggagaagtaaaagagtagtgcataggaaataaaggtaattctagatat 16282818  T
Q  116 cagtgagcccaaatataaataggagtattagggattagaaatcagttttg-ctaattagaaaaaaggaagaagaaaaccatagggagagaagcggaaccc 214  Q
     ||||||||||  |||| |||||| ||||||||||||||||||||||||| ||||| ||  |||||| |||| | || || || || ||||| |||||||    
T  16282819 tagtgagcccatttatatataggaatattagggattagaaatcagttttggctaataagggaaaagggagaaaagaagcaaagagaaagaagtggaaccc 16282918  T
Q  215 tagtgcagcaacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgt 314  Q
    || ||||||||||||||| |||| | || ||||||| || ||||||||||| |||||||||| ||||||| |||||| ||   |||| ||| |||| |||    
T  16282919 tactgcagcaacatcgagtcaaaccaaatgtttctacgggttcgaggtaagggggagaatctattcatctatagggtttatgtttctattggggggttgt 16283018  T
Q  315 aaaggggtta 324  Q
    |||| |||||    
T  16283019 aaagaggtta 16283028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 11558769 - 11558457
Alignment:
Q  16 ataaataaagagtcgtgggtgtagaaagtaagattataataaatgggggaggggagaagtaaaagagtagtgcatagaaaaggaatacaattatagaaaa 115  Q
    |||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||  |||  ||  ||||||||   |     
T  11558769 ataaatgaagagtcgtgggtgtagaaagtaagattttaataagtgggggaggggagaagtaaaagagtagtgcgtaagaaataaaggcaattataacgat 11558670  T
Q  116 cagtgagcccaaatataaataggagtattagggattagaaatcagttttgctaattagaaaaaaggaagaagaaaaccatagggagagaagcggaaccct 215  Q
     |||||||||| |||||||| ||| |||||||| |||||||||||||||||| || ||| ||||| | ||||| || || | ||||||||| ||||||||    
T  11558669 tagtgagcccatatataaatgggaatattagggtttagaaatcagttttgctgatgagagaaaagta-gaagagaagcagatggagagaagtggaaccct 11558571  T
Q  216 agtgcagcaacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgta 315  Q
    | |||| |||||||||| |||| |||||||||||| |||||| |||||||  |||||||||  ||| ||||||||| ||   || | |||||||| ||||    
T  11558570 aatgcaacaacatcgagccaaaccgaaggtttctacggattctaggtaaggaggagaatctaatcaactctagggtttatatttttattgtggggatgta 11558471  T
Q  316 aaggggttatagta 329  Q
    ||| ||||| ||||    
T  11558470 aagaggttagagta 11558457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 12231171 - 12230906
Alignment:
Q  10 aagaatataaataaagagtcgtgggtgtagaaagtaagattataataaatgggggaggggagaagtaaaagagtagtgcatagaaaaggaatacaattat 109  Q
    ||||| ||||||||||||||||| ||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| ||| |||| ||  |||||||    
T  12231171 aagaaaataaataaagagtcgtgagtgtagaaagtaagattttaataagtgggggaggagagaagtaaaagagtagtgcttaggaaagaaaagcaattat 12231072  T
Q  110 agaaaacagtgagcccaaatataaataggagtattagggattagaaatcagtttt-gctaattagaaaaaaggaagaagaaaaccatagggagagaagcg 208  Q
    ||| |  | |||||||  ||||||||| || ||||||||||||||||||| |||| ||| | |||| |||||| |||||| || || ||||||||||||     
T  12231071 agagattaatgagccc-gatataaataagaatattagggattagaaatcaattttggctta-tagagaaaagggagaagagaagcaaagggagagaagca 12230974  T
Q  209 gaaccctagtgcagcaacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaatct 276  Q
    ||||||| ||| ||||||||| || ||||  |||||||||||  ||||||||||||| |||| |||||    
T  12230973 gaaccctcgtgtagcaacatcaagccaaactgaaggtttctacagattcgaggtaagggggataatct 12230906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 8809072 - 8808797
Alignment:
Q  16 ataaataaagagtcgtgggtgtagaaagtaagattataataaatgggggaggggagaagtaaaagagtagtgcatagaaaaggaatacaattatagaaaa 115  Q
    |||||||| |||||| |||||||||||||||||||  ||||| ||| |||||||||||||||||  ||||  ||||| ||| ||  ||||  |||   ||    
T  8809072 ataaataaggagtcgagggtgtagaaagtaagatttaaataagtggtggaggggagaagtaaaattgtaggacataggaaaagaggacaaccataacgaa 8808973  T
Q  116 cagtgagcccaaatataaataggagtattagggattagaaatcagttttgctaattagaaaaaaggaagaagaaaaccatagggagagaagcggaaccct 215  Q
     ||||| |||| ||||||||| || || ||| |||||||||||||||||||| || | | |||||  | || | || || | ||||||| ||||||||||    
T  8808972 tagtgatcccagatataaataagaataatagagattagaaatcagttttgctgatcaaagaaaagagataaaagaagcagaaggagagaggcggaaccct 8808873  T
Q  216 agtgcagcaacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaatctcttcatctctagggt 291  Q
    |||||||| | |||||| |||| | |||||||||| ||||| |||||||| |||||||||| ||||||||||||||    
T  8808872 agtgcagcgatatcgagtcaaaccaaaggtttctacggatttgaggtaagggggagaatctattcatctctagggt 8808797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 18218218 - 18218418
Alignment:
Q  16 ataaataaagagtcgtgggtgtagaaagtaagattataataaatgggggaggggagaagtaaaagagtagtgcatagaaaaggaatacaattatagaaaa 115  Q
    |||||||||||||||| ||| ||||||||||||||  |||||  |||||| |||||||||||||||||||||| ||| |||  |   ||||||||   |     
T  18218218 ataaataaagagtcgttggtttagaaagtaagatttaaataagcgggggatgggagaagtaaaagagtagtgcgtagcaaataatggcaattataacgat 18218317  T
Q  116 cagtgagcccaaatataaataggagtattagggattagaaatcagttttgctaattagaaaaaaggaagaagaaaaccatagggagagaagcggaaccct 215  Q
     |||||||||| ||||||||  || |||||||| |||||||||||||||||| || ||  |||||| |||||| || || | ||||||||| ||||||||    
T  18218318 tagtgagcccatatataaatgagaatattaggggttagaaatcagttttgcttatgagcgaaaaggtagaagagaagcagatggagagaagtggaaccct 18218417  T
Q  216 a 216  Q
    |    
T  18218418 a 18218418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 347
Target Start/End: Complemental strand, 17338906 - 17338817
Alignment:
Q  258 gaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgtaaaggggttatagtaagagtgttgttatgatgg 347  Q
    |||||||  ||||||||||||| ||||||||||| ||||||| |||||||||| ||||||| | ||| || | ||||| |||||| ||||    
T  17338906 gaggtaaatgggagaatctctttatctctagggtttaatattttgttgtggggatgtaaagagattagagaatgagtggtgttataatgg 17338817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 11332646 - 11332613
Alignment:
Q  258 gaggtaagagggagaatctcttcatctctagggt 291  Q
    ||||||||||||||||||||||||||| ||||||    
T  11332646 gaggtaagagggagaatctcttcatctatagggt 11332613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 176 - 345
Target Start/End: Complemental strand, 15119108 - 15118940
Alignment:
Q  176 aaaaggaagaagaaaaccatagggagagaagcggaaccctagtgcagcaacatcgaggcaaatcgaaggtttctatggattcgaggtaagagggagaatc 275  Q
    |||||| |||||||||  | | |||||||||| ||||||||||||||||||||||||  |||||||||||||||| | |||||||||||| || ||||||    
T  15119108 aaaagggagaagaaaagaagacggagagaagcagaaccctagtgcagcaacatcgagctaaatcgaaggtttctacg-attcgaggtaaggggaagaatc 15119010  T
Q  276 tcttcatctctagggtataatattctgttgtggggctgtaaaggggttatagtaagagtgttgttatgat 345  Q
    |||||||||||||| | |||||||   |||||||  ||||||||||||||| ||  ||||||||||||||    
T  15119009 tcttcatctctaggatttaatatttgtttgtgggaatgtaaaggggttataatagtagtgttgttatgat 15118940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 259 - 347
Target Start/End: Original strand, 20145859 - 20145948
Alignment:
Q  259 aggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgtaaa-ggggttatagtaagagtgttgttatgatgg 347  Q
    ||||||| || ||||||||||||||||| |||| || ||||||||||||||||| |||| |||||||  ||| |||||| ||||||||||    
T  20145859 aggtaaggggaagaatctcttcatctcttgggtttactattctgttgtggggctttaaagggggttaatgtatgagtgtggttatgatgg 20145948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 259 - 347
Target Start/End: Complemental strand, 22186980 - 22186891
Alignment:
Q  259 aggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgtaaa-ggggttatagtaagagtgttgttatgatgg 347  Q
    ||||||| || ||||||||||||||||| |||| || ||||||||||||||||| |||| |||||||  ||| |||||| ||||||||||    
T  22186980 aggtaaggggaagaatctcttcatctcttgggtttactattctgttgtggggctttaaagggggttaatgtatgagtgtggttatgatgg 22186891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 7680599 - 7680663
Alignment:
Q  252 ggattcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgtaa 316  Q
    |||||||||||||| |||||||||||||||| |||||||| || ||||   ||||||||||||||    
T  7680599 ggattcgaggtaagggggagaatctcttcatgtctagggtttattatttcattgtggggctgtaa 7680663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 16624 - 16533
Alignment:
Q  256 tcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgtaaaggggttatagtaagagtgttgttatgatgg 347  Q
    |||||||||| ||||||||||||||||||||||||| ||||||| |  ||| ||| ||||||||||||| |||| |||||||||||||||||    
T  16624 tcgaggtaagggggagaatctcttcatctctagggtttaatatttttctgtagggttgtaaaggggttagagtatgagtgttgttatgatgg 16533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 31276 - 31185
Alignment:
Q  256 tcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgtaaaggggttatagtaagagtgttgttatgatgg 347  Q
    |||||||||| ||||||||||||||||||||||||| || |||| |||| | ||| ||||||||||||  |||| |||||||||||||||||    
T  31276 tcgaggtaagggggagaatctcttcatctctagggtttattattttgtttttgggttgtaaaggggttggagtatgagtgttgttatgatgg 31185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 26065 - 26156
Alignment:
Q  256 tcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgtaaaggggttatagtaagagtgttgttatgatgg 347  Q
    |||||||||| ||||||||||||||||||||||||| || |||| || | | ||| ||||||||||||  |||| |||||||||||||||||    
T  26065 tcgaggtaagggggagaatctcttcatctctagggtttattattttgctatagggttgtaaaggggttggagtatgagtgttgttatgatgg 26156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 51624858 - 51624948
Alignment:
Q  256 tcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgtaaaggggttatagtaagagtgttgttatgatgg 347  Q
    |||||||||| ||| ||||||||||||||||| ||| ||||||| || ||| ||| ||||||||||||| |||| |||||||||||||||||    
T  51624858 tcgaggtaaggggg-gaatctcttcatctctaaggtttaatattttgctgtagggttgtaaaggggttagagtatgagtgttgttatgatgg 51624948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 261 - 347
Target Start/End: Original strand, 16665 - 16751
Alignment:
Q  261 gtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgtaaaggggttatagtaagagtgttgttatgatgg 347  Q
    ||||| ||||||||||||||||||||||||| || |||| || ||| ||| ||||||||||||  |||| |||||||||||||||||    
T  16665 gtaagggggagaatctcttcatctctagggtttattattttgctgtagggttgtaaaggggttggagtatgagtgttgttatgatgg 16751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 261 - 347
Target Start/End: Original strand, 25723 - 25809
Alignment:
Q  261 gtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgtaaaggggttatagtaagagtgttgttatgatgg 347  Q
    ||||| ||||||||||||||||||||||||| || |||| || ||| ||| ||||||||||||  |||| |||||||||||||||||    
T  25723 gtaagggggagaatctcttcatctctagggtttattattttgctgtagggttgtaaaggggttggagtatgagtgttgttatgatgg 25809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 254 - 347
Target Start/End: Complemental strand, 71376 - 71282
Alignment:
Q  254 attcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgtaaagg-ggttatagtaagagtgttgttatgatgg 347  Q
    |||||||||||| |||||||||||||||||||| |||| || ||||||||||||||||| |||||| |||||  ||| | |||| ||||||||||    
T  71376 attcgaggtaagggggagaatctcttcatctcttgggtttactattctgttgtggggctttaaaggaggttaatgtatgcgtgtggttatgatgg 71282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 132810 - 132719
Alignment:
Q  256 tcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgtaaaggggttatagtaagagtgttgttatgatgg 347  Q
    |||||||||| |||||||||||||||| |||||||| || |||| |||||| ||| ||||||||||||  | || |||| ||||||||||||    
T  132810 tcgaggtaagggggagaatctcttcatttctagggtttattattttgttgtagggttgtaaaggggttggaatatgagttttgttatgatgg 132719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 143 - 290
Target Start/End: Complemental strand, 17883425 - 17883280
Alignment:
Q  143 ttagggattagaaatcagttttgctaattagaaaaaaggaagaagaaaaccatagggagagaagcggaaccctagtgcagcaacatcgaggcaaatcgaa 242  Q
    ||||||||||||||||||||||| | ||  |   ||||  |||||| || || | |||||||| |||||||||||||||   | | |||| |||| ||||    
T  17883425 ttagggattagaaatcagttttgttgatccggggaaagagagaagagaagcagaaggagagaaacggaaccctagtgcattga-accgagccaaaccgaa 17883327  T
Q  243 ggtttctatggattcgaggtaagagggagaatctcttcatctctaggg 290  Q
    ||||||||||||||||||||||| |||||||||| ||||||| |||||    
T  17883326 ggtttctatggattcgaggtaag-gggagaatctattcatctataggg 17883280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 26859181 - 26859217
Alignment:
Q  254 attcgaggtaagagggagaatctcttcatctctaggg 290  Q
    |||||||||||| ||||||||||||||||||||||||    
T  26859181 attcgaggtaagggggagaatctcttcatctctaggg 26859217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 4127 - 4191
Alignment:
Q  254 attcgaggtaagagggagaatctcttcatctctagggtataatattctgttgtggggctgtaaag 318  Q
    |||||||||||| | |||||||||||||||  |||||| || |||| | ||||||||||||||||    
T  4127 attcgaggtaagggagagaatctcttcatccttagggtttattattttattgtggggctgtaaag 4191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University