View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16227_low_1 (Length: 492)
Name: NF16227_low_1
Description: NF16227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16227_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 2 - 492
Target Start/End: Original strand, 4487192 - 4487689
Alignment:
| Q |
2 |
ggtgaaaaatgttaagcctattagcacaactatttaactgtcatttaagatgggataaattaaggttttgaactctaccatttaagttggttcgtcctac |
101 |
Q |
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| T |
4487192 |
ggtgaaaaatgttaagcctattagcacaactatttaactgtcatttaagatgggataaattaaggttttgaactctaccatttaagttggttcgtcctac |
4487291 |
T |
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| Q |
102 |
ttaatccgtgtaaaaataaagtgacatggttggacaagtggtttgtaggtaatttacaaaatctctttctttttctacttgagttatttatattttctgc |
201 |
Q |
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| T |
4487292 |
ttaatccgtgtaaaaataaagtgacatggttggactagtggtttgtaggtaatttacaaaatctctttctttttctacttgagttatttatattttctgc |
4487391 |
T |
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| Q |
202 |
aactattaacatattctctctttacagaccaatgaacttagagctttatttttgcttt-----nnnnnnnnnnngttagagctttactttgttaaaaaga |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4487392 |
aactattaacatattctctctttacagaccaatgaacttagatctttatttttgctttaaaaaaaaaaaaaaaagttagagctttactttgttaaaaaga |
4487491 |
T |
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| Q |
297 |
aactctgagcnnnnnnncttcgatacat--tnnnnnnncttagaacttgattgtttgcgtaagaattcttggattacgttgaattataattaatggactg |
394 |
Q |
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|||| ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487492 |
aactttgagctttttttctttgatacataaaaaaaaaacttagaacttgattgtttgcgtaagaattcttggattacgttgaattataattaatggactg |
4487591 |
T |
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| Q |
395 |
cctttgaagttttcttttaatgtttttgatagatcaactcgccattaggcaatggtcttagtttttgctcttctaattttgaaatttctatgttatat |
492 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4487592 |
tctttgaagttttctattaatgtttttgatagatcaactcgccattaggcaattgtcttagtttttgctcttctaattttgaagtttctatgttatat |
4487689 |
T |
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