View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16228_high_2 (Length: 366)
Name: NF16228_high_2
Description: NF16228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16228_high_2 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 24 - 366
Target Start/End: Original strand, 5433045 - 5433387
Alignment:
| Q |
24 |
acatctaacaacaacaagtcttgaattttcttgtctccttcaacactcaatattgctgcttgaaccgaggcatcatacaccacaacttcataagaattaa |
123 |
Q |
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| T |
5433045 |
acatctaacaacaacaagtcttgaattttcttgtctccttcaacactcaatatcgctgcttgaaccgaggcatcatacaccacaacttcataaggattaa |
5433144 |
T |
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| Q |
124 |
tgcttttgcatggctctttgatttctccattgactctaataatttccttgatttttacttatttttgcctcatccnnnnnnntttccagtgtctccatgc |
223 |
Q |
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| T |
5433145 |
tgcttttgcatggctctttgatttctccattgactctaataatttccttgatttttacttatttttgcctcatcctaaaatttttccagtgtctccatgc |
5433244 |
T |
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| Q |
224 |
attgtttaaacaagtcctggtttattccctcaaacaaagctctagtaacaaacaaagctctagtaacagtgaaaagtagacaaagctctttactttctca |
323 |
Q |
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| T |
5433245 |
attgtttaaacaagtcctggtttattccctcaaacaaagctctagtaacaaacaaagctctagtaacagtgaaaagtagacagagctctttactttatca |
5433344 |
T |
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| Q |
324 |
catgctgaccttaacctccacaaagctttggaattctcactga |
366 |
Q |
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| T |
5433345 |
catgctgaccttaatctccacaaagctttggaattctcactga |
5433387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 36 - 162
Target Start/End: Complemental strand, 5446324 - 5446198
Alignment:
| Q |
36 |
aacaagtcttgaattttcttgtctccttcaacactcaatattgctgcttgaaccgaggcatcatacaccacaacttcataagaattaatgcttttgcatg |
135 |
Q |
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| T |
5446324 |
aacaagtcttcgattttcttgtctccttcagtattcaatattgctgcttgaacagcggcgccataagccacagcttcatcaggattaatgcttttgcaag |
5446225 |
T |
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| Q |
136 |
gctctttgatttctccattgactctaa |
162 |
Q |
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| T |
5446224 |
gctctttgacttcatcgttgactctaa |
5446198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 5445952 - 5445895
Alignment:
| Q |
309 |
ctctttactttctcacatgctgaccttaacctccacaaagctttggaattctcactga |
366 |
Q |
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| T |
5445952 |
ctctttgctttctcacatgctgatcttaacctccccaaagctttgaaattctcactga |
5445895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 5440718 - 5440779
Alignment:
| Q |
309 |
ctctttactttctcacatgctgaccttaac----ctccacaaagctttggaattctcactga |
366 |
Q |
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| T |
5440718 |
ctctttgctttctcacatgctgaccttaactaacctccccaaagctttggaattctcactga |
5440779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 273
Target Start/End: Complemental strand, 5446084 - 5446025
Alignment:
| Q |
214 |
gtctccatgcattgtttaaacaagtcctggtttattccctcaaacaaagctctagtaaca |
273 |
Q |
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| T |
5446084 |
gtctccatgcactttttgaacaaatccttgtttatttcctcaaagaaagctctagtaaca |
5446025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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