View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16228_high_3 (Length: 263)
Name: NF16228_high_3
Description: NF16228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16228_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 7908823 - 7909068
Alignment:
| Q |
1 |
gaaagaaaaagattatagaaaatataagcatttctaaccagtgcaagtttcttataagcattccttagctctgaatcagagcattccttattcaatccca |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7908823 |
gaaagaaaaagattatagaaagtataagcatttctaaccagtgcaagtttcttataagcattccttagctctgaatcagagcattccttattcaatccca |
7908922 |
T |
|
| Q |
101 |
aaactgcatagaaatcattgcttttgtttccttcgttagccatattatttccaacaagaacaatccaaattttcacaaccaactagatcaaccaaccaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7908923 |
aaactgcatagaaatcattgcttttgtttccttcgttagccatattatttccaacaagaacaatccaaattttcacaaccaactagatcaaccaaccaaa |
7909022 |
T |
|
| Q |
201 |
ctagaattctccaacagaaccaatcaaatatcaaactaatgttttt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7909023 |
ctagaattctccaacagaaccaatcaaatatcaaactaatgttttt |
7909068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University