View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16228_low_1 (Length: 688)
Name: NF16228_low_1
Description: NF16228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16228_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 174 - 327
Target Start/End: Original strand, 14472093 - 14472246
Alignment:
| Q |
174 |
tgctacaacaataaacataacatgaagatctcaaatgtccaaaccttgttcatagactcttccaaactgcgaatgtccacacgccttgctatgttcttcg |
273 |
Q |
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| T |
14472093 |
tgctacaacaataaacataacatgaagatctcaaatgtccaaaccttgttcatagactcttccaaactgcgaatgtccacacgccttgctatgttcttcg |
14472192 |
T |
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| Q |
274 |
ccgtaatcaacttgtcctcctttcaaataatagaacaattctctagccctaagg |
327 |
Q |
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| T |
14472193 |
ccgtaatcaacttgtcctcctttcaaataatagaacaattctctagccctaagg |
14472246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 389 - 511
Target Start/End: Original strand, 14472308 - 14472430
Alignment:
| Q |
389 |
taagataaaaattccatgaacttacctatcatagatgcttgttaaagaccctagatcaggaacaagaaccctttcatctttcttctctgctccagcaaaa |
488 |
Q |
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| T |
14472308 |
taagataaaaattccatgaacttacctatcatagatgcttgttaaagaccctagatcaggaacaagaaccctttcatctttcttctctgctccagcaaaa |
14472407 |
T |
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| Q |
489 |
tatgataaaccacctaatctctg |
511 |
Q |
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| T |
14472408 |
tatgataaaccacctaatctctg |
14472430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 585 - 671
Target Start/End: Original strand, 14472504 - 14472590
Alignment:
| Q |
585 |
tgatgaatcattacccctttgccaaatccaaaaattccatgaaccaaaacaataggaggaagatcattatcaaattttgaatctttt |
671 |
Q |
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| T |
14472504 |
tgatgaatcattacccctttgccaaatccaaaaattccatgaaccaaaacaataggaggaagatcattatcaaattttgaatctttt |
14472590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 14471938 - 14472015
Alignment:
| Q |
9 |
aacctgtgctccagctgaatgcccaacaaaatgaataggatgatcctcatcccattcaggataatgtcctgtgtatac |
86 |
Q |
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| T |
14471938 |
aacctgtgctccagctgaatgcccaacaaaatgaataggatgatcctcatcccattcaggataatgtcctgtgtatac |
14472015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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