View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16228_low_2 (Length: 645)
Name: NF16228_low_2
Description: NF16228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16228_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 534; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 70 - 640
Target Start/End: Complemental strand, 40265309 - 40264740
Alignment:
| Q |
70 |
gtcaagattagcctactgaactgaacaattcttattatcacttacgtagtttcttctcttagtaaattaataaaagaagggattcagggttccattgaaa |
169 |
Q |
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| T |
40265309 |
gtcaagattagcctactgaactgaacaattcttattatcacttacgtagtttcttctcttagtaaattaataaaagaagggattcagggttccattgaaa |
40265210 |
T |
|
| Q |
170 |
atggtacttactttttattgattaaaccaaaccaagaactttttctcttacattaactatcaactattaaaatataataagtgactttctccgatcataa |
269 |
Q |
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| T |
40265209 |
atggtacttattttttattgattaaaccaaaccaagaacttcttctcttacattaactatcaactattaaaatataataagtgactttctccgatcataa |
40265110 |
T |
|
| Q |
270 |
gataagtaaaacgaacttcagatcataagtaattacactcaataataaccattgttatgtcttgcttcctattttccttttatcaactttgttaatatca |
369 |
Q |
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| T |
40265109 |
gataagtaaaacgaacttcagatcataagtaattacactcaataataaccattgttatgtcttgcttcctattttccttttatcaactttgttaatatca |
40265010 |
T |
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| Q |
370 |
atcatttgttgtgctcaaacccctttttatgcaaaagtaattttttaactgtatgatcaggcctctagagatggtgacgggactgttcgaattcagagac |
469 |
Q |
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| T |
40265009 |
atcatttgttgtgctcaaacccctttttatgcaaaagtaattttttaactgtatgatcaggcctctagagatggtgacgggactgttcgaattcagagac |
40264910 |
T |
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| Q |
470 |
ctcccaaaggaccattttatgtttcccgcaaaacgattgatgaacagattgcagatcttacatatttcgcgaggttgctttactgcctagtttcttattc |
569 |
Q |
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| T |
40264909 |
ctcccaaaggaccattttatgtttcccgcaaaacgattgatgaacagattgcagatcttacatatttcgcgaggttgctttactgcctagtttcttattc |
40264810 |
T |
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| Q |
570 |
tgtgttttgttctataagannnnnnncattgactgaactttcttattaggaggtttaagtatgcttctgtg |
640 |
Q |
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| T |
40264809 |
tgtgttttgttctataagattttttt-attgactgaactttcttattaggaggtttaagtatgcttctgtg |
40264740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 40265486 - 40265418
Alignment:
| Q |
22 |
ttcggtgcacttacttattggaggctttctcaatcgaaaatgaaaaaggtcaagattagcctactgaac |
90 |
Q |
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| T |
40265486 |
ttcggtgcacttacttattggaggctttctcaatcgaaaatgaaaaaggtcaagattagcctactgaac |
40265418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 409 - 515
Target Start/End: Complemental strand, 40283819 - 40283713
Alignment:
| Q |
409 |
attttttaactgtatgatcaggcctctagagatggtgacgggactgttcgaattcagagacctcccaaaggaccattttatgtttcccgcaaaacgattg |
508 |
Q |
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| T |
40283819 |
attttttaactgtatgatcaggcctctaaagatgatgacgggaccattcgaattcagcgacctcccaaagggccattttatgtctctagcaaagcgattg |
40283720 |
T |
|
| Q |
509 |
atgaaca |
515 |
Q |
| |
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||||||| |
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| T |
40283719 |
atgaaca |
40283713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 419 - 522
Target Start/End: Complemental strand, 40291277 - 40291174
Alignment:
| Q |
419 |
tgtatgatcaggcctctagagatggtgacgggactgttcgaattcagagacctcccaaaggaccattttatgtttcccgcaaaacgattgatgaacagat |
518 |
Q |
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|||||||||||||||||| ||||| ||| ||||| ||||||||||| |||||| ||||| ||||||||||| || ||||||||||||||||| | || |
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| T |
40291277 |
tgtatgatcaggcctctaaagatgatgatgggaccgttcgaattcaacgacctcttaaagggccattttatgtctctggcaaaacgattgatgaaaacat |
40291178 |
T |
|
| Q |
519 |
tgca |
522 |
Q |
| |
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|||| |
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| T |
40291177 |
tgca |
40291174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 34368908 - 34368855
Alignment:
| Q |
26 |
gtgcacttacttattggaggctttctcaatcgaaaatgaaaaaggtcaagatta |
79 |
Q |
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| T |
34368908 |
gtgcactaacttattggaggctttctcaatcgaaaatggaaagagtcaagatta |
34368855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 11678047 - 11678275
Alignment:
| Q |
19 |
cctttcggtgcacttacttattggaggctttctcaatcgaaaatgaaaaaggtcaagattagcctactgaactgaacaattcttattatcacttacgtag |
118 |
Q |
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| T |
11678047 |
cctttcgatgcacttacttattggaggctttctcaatcgaaaatggaaagagtcaagattag---------ctgaacgattctttctaccacttacgtaa |
11678137 |
T |
|
| Q |
119 |
tttcttctcttagtaaattaataaaagaagggattcagggttccattgaaaatggtacttactttttattgattaaaccaaaccaagaactttttctctt |
218 |
Q |
| |
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||||||||||| ||||||| ||| || |||||||| ||||||||||||||||||||| ||| |||||| || ||||||||||||| ||||||| |
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| T |
11678138 |
tttcttctctttgtaaattcatagaataagggattatgggttccattgaaaatggtac------ttttttgattgaattaaaccaagaacttcttctctt |
11678231 |
T |
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| Q |
219 |
acattaactatcaactattaaaatataataagtgactttctccg |
262 |
Q |
| |
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|||| ||||||||||||||| || |||||||||||||| ||||| |
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| T |
11678232 |
acatcaactatcaactattataacataataagtgacttcctccg |
11678275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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