View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16228_low_4 (Length: 354)

Name: NF16228_low_4
Description: NF16228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16228_low_4
NF16228_low_4
[»] scaffold0019 (1 HSPs)
scaffold0019 (16-354)||(58053-58391)
[»] scaffold0038 (4 HSPs)
scaffold0038 (10-354)||(27526-27870)
scaffold0038 (56-354)||(43044-43342)
scaffold0038 (14-354)||(116874-117207)
scaffold0038 (27-354)||(34803-35130)
[»] chr6 (58 HSPs)
chr6 (10-354)||(28227028-28227372)
chr6 (14-354)||(28185444-28185787)
chr6 (14-354)||(28181192-28181532)
chr6 (56-354)||(28242882-28243180)
chr6 (55-348)||(28297523-28297816)
chr6 (55-348)||(28514257-28514550)
chr6 (14-354)||(28325559-28325892)
chr6 (27-354)||(28234642-28234968)
chr6 (134-348)||(26949745-26949959)
chr6 (97-351)||(26848741-26848995)
chr6 (109-351)||(27214498-27214743)
chr6 (109-351)||(27234485-27234730)
chr6 (97-252)||(26959346-26959501)
chr6 (101-351)||(27337921-27338171)
chr6 (101-351)||(27398661-27398911)
chr6 (103-352)||(31284368-31284617)
chr6 (97-350)||(25071741-25071994)
chr6 (214-354)||(26937172-26937312)
chr6 (216-354)||(28150015-28150151)
chr6 (208-354)||(27718342-27718488)
chr6 (132-317)||(26811624-26811809)
chr6 (242-354)||(26341928-26342043)
chr6 (97-252)||(26635870-26636025)
chr6 (97-252)||(26741836-26741991)
chr6 (230-352)||(25579799-25579921)
chr6 (214-352)||(26048925-26049063)
chr6 (214-352)||(26070094-26070232)
chr6 (258-352)||(26823920-26824014)
chr6 (208-354)||(27610965-27611111)
chr6 (292-354)||(27677661-27677723)
chr6 (292-354)||(27679024-27679086)
chr6 (208-354)||(27724808-27724954)
chr6 (177-351)||(28098301-28098475)
chr6 (97-350)||(26975134-26975387)
chr6 (293-354)||(28139619-28139680)
chr6 (292-352)||(25481822-25481882)
chr6 (292-352)||(26142945-26143005)
chr6 (297-352)||(26056006-26056061)
chr6 (297-352)||(26075976-26076031)
chr6 (208-354)||(27592983-27593129)
chr6 (292-354)||(27706449-27706511)
chr6 (303-351)||(2184369-2184417)
chr6 (292-352)||(25538620-25538680)
chr6 (196-352)||(26623056-26623212)
chr6 (196-352)||(26729034-26729190)
chr6 (297-353)||(27698546-27698602)
chr6 (297-352)||(26656069-26656124)
chr6 (297-352)||(26762040-26762095)
chr6 (210-276)||(29826183-29826249)
chr6 (132-189)||(26617865-26617922)
chr6 (132-189)||(26723793-26723850)
chr6 (242-354)||(26646557-26646669)
chr6 (242-354)||(26752525-26752637)
chr6 (303-350)||(2184980-2185027)
chr6 (297-352)||(26884243-26884300)
chr6 (97-162)||(26937376-26937441)
chr6 (294-351)||(27665166-27665223)
chr6 (74-123)||(28150235-28150284)
[»] chr1 (3 HSPs)
chr1 (102-354)||(28164207-28164458)
chr1 (102-352)||(28127523-28127773)
chr1 (214-354)||(268313-268453)
[»] chr4 (6 HSPs)
chr4 (203-350)||(5090912-5091059)
chr4 (214-354)||(18655433-18655573)
chr4 (214-354)||(18679523-18679663)
chr4 (214-354)||(18699356-18699496)
chr4 (214-354)||(18724041-18724181)
chr4 (214-354)||(18731460-18731600)
[»] chr2 (3 HSPs)
chr2 (97-252)||(17993536-17993691)
chr2 (209-354)||(3279766-3279914)
chr2 (289-350)||(17993728-17993789)
[»] chr8 (1 HSPs)
chr8 (214-354)||(29273739-29273879)
[»] scaffold0349 (2 HSPs)
scaffold0349 (208-354)||(14319-14464)
scaffold0349 (292-349)||(3468-3525)
[»] scaffold0277 (1 HSPs)
scaffold0277 (231-349)||(4657-4775)
[»] chr5 (1 HSPs)
chr5 (209-279)||(16689164-16689234)


Alignment Details
Target: scaffold0019 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 354
Target Start/End: Original strand, 58053 - 58391
Alignment:
Q  16 atgaaacagttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtaaagtggggtacctagtattgaaatggtggccagag 115  Q
    ||||||| |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58053 atgaaacggttataaaatagaatattaaagagatatgacatatgtaagaatgtaaaacatgagtaaagtggggtacctagtattgaaatggtggccagag 58152  T
Q  116 aagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgcttggcaagtgctttac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  58153 aagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgctcggcaagtgctttac 58252  T
Q  216 cataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtggac 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  58253 cataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattcctcgaagcagtgaatgatgtggac 58352  T
Q  316 aaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    || ||||||||||||||||||||||||||||||||||||    
T  58353 aagttcgttcaagcaaaatgaagaagaagcatagttgat 58391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 354
Target Start/End: Complemental strand, 27870 - 27526
Alignment:
Q  10 agtgagatgaaacagttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtaaagtggggtacctagtattgaaatggtgg 109  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |  ||||||||| |||||  ||||||    
T  27870 agtgagatgaaatagttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtgaactacggtacctaggattgatttggtgg 27771  T
Q  110 ccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgcttggcaagtg 209  Q
    ||||||||||||||||| |||||||||||  ||||||||||||||||||| || ||||||| |||| |||||||||||||||| ||||| |   | ||||    
T  27770 ccagagaagttagcagtttgagtaagagcaatcttccatttctgcaacctatccatgctatgcttgttattttggaacctctctatatgatcatccagtg 27671  T
Q  210 ctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgat 309  Q
    ||||||||||||| || |  ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| || |||||||||||| ||||||||    
T  27670 ctttaccataactgcccttgtgatgtcgcacatgagaaggttccacatcatagaaaattggcaaaacaaggcgccgattttccttgaagcaatgaatgat 27571  T
Q  310 gtggacaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||||||| ||||| |||||||||||||||||||||||| |||||    
T  27570 gtggacaagttcgtccaagcaaaatgaagaagaagcataattgat 27526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 56 - 354
Target Start/End: Complemental strand, 43342 - 43044
Alignment:
Q  56 tatgtaagaatgtaaaacatgagtaaagtggggtacctagtattgaaatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgca 155  Q
    ||||||||||||  |||||||||| |||||| |||||||| | ||||||||||||||||||||||||| || ||||| |||||  |||||||||||||||    
T  43342 tatgtaagaatgctaaacatgagttaagtggtgtacctagaactgaaatggtggccagagaagttagctgtttgagttagagcactcttccatttctgca 43243  T
Q  156 acctctctatgctatccttgctattttggaacctctcaatatgcttggcaagtgctttaccataacttccatcttgatgtcgcacgtgagaaggttccac 255  Q
    ||||||| ||| ||||| |||||||||||||| ||||||||||||  || ||||||||||||||||| |||   ||||||| ||||| ||||||||||||    
T  43242 acctctccatgttatccgtgctattttggaacttctcaatatgctcagccagtgctttaccataactgccaatctgatgtctcacgttagaaggttccac 43143  T
Q  256 gtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
     |||||||||||||||||||||||||| |||| || |||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||    
T  43142 atcatagaaaattggcaaaactaggcgtccatttttcttgcagcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgat 43044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 14 - 354
Target Start/End: Complemental strand, 117207 - 116874
Alignment:
Q  14 agatgaaacagttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtaaagtggggtacctagtattgaaatggtggccag 113  Q
    ||||||| | |||||||||||||| ||||||||| |||   |||||||||||   ||||||| ||| |||| || |||| || | ||||||||||||| |    
T  117207 agatgaatcggttagaaaatagaaaattaaagaaatat---atatgtaagaacacaaaacattagttaagtaggttacccaggactgaaatggtggcctg 117111  T
Q  114 agaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgcttggcaagtgcttt 213  Q
    ||||||||||||| |||||||||||  |||||||||||||||||||||| ||||||||| |||||||    |||||||||||||||| ||| ||||||||    
T  117110 agaagttagcagtttgagtaagagccatcttccatttctgcaacctctccatgctatccgtgctatt----aacctctcaatatgctcggccagtgcttt 117015  T
Q  214 accataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtgg 313  Q
    ||||||||| || |  |||||||||||||||||||||||||| || ||||||| |||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  117014 accataactgcccttgtgatgtcgcacgtgagaaggttccacatcgtagaaaactggctaaactaggcgcccattttctttgaagcagtgaataatgtgg 116915  T
Q  314 acaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||| ||| | ||||||||| |||||||||||||| |||||    
T  116914 acaagttcatccaagcaaaaggaagaagaagcataattgat 116874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 27 - 354
Target Start/End: Complemental strand, 35130 - 34803
Alignment:
Q  27 agaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtaaagtggggtacctagtattgaaatggtggccagagaagttagcagt 126  Q
    ||||||||||  |||||||||  || | || |||| ||||| |||| |||||  || ||| |||||  | |||||||||||||||||| |||||||  ||    
T  35130 agaaaatagagaattaaagaaacattatatttgtatgaatgaaaaatatgagggaattggtgtaccctggattgaaatggtggccagaaaagttagatgt 35031  T
Q  127 ctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgcttggcaagtgctttaccataacttcca 226  Q
     |||||||||||  |||||||||||||||||||||| ||| |||||||| ||||||||||| |||  ||||| |   | ||||||||||||||||| ||     
T  35030 ttgagtaagagccatcttccatttctgcaacctctccatgttatccttgttattttggaacttctttatatgatcatccagtgctttaccataactgccc 34931  T
Q  227 tcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtggacaaattcgttca 326  Q
    |  |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||   ||||||||||||||||||||||||||||| ||||| ||    
T  34930 ttgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagtgaatgatgtggacaagttcgtcca 34831  T
Q  327 agcaaaatgaagaagaagcatagttgat 354  Q
    |||||||||||||||||||||| |||||    
T  34830 agcaaaatgaagaagaagcataattgat 34803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 58)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 354
Target Start/End: Complemental strand, 28227372 - 28227028
Alignment:
Q  10 agtgagatgaaacagttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtaaagtggggtacctagtattgaaatggtgg 109  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |  ||||||||| |||||  ||||||    
T  28227372 agtgagatgaaatagttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtgaactacggtacctaggattgatttggtgg 28227273  T
Q  110 ccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgcttggcaagtg 209  Q
    ||||||||||||||||| |||||||||||  ||||||||||||||||||| || ||||||| |||| |||||||||||||||| ||||| |   | ||||    
T  28227272 ccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctatccatgctatgcttgttattttggaacctctctatatgatcatccagtg 28227173  T
Q  210 ctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgat 309  Q
    ||||||||||||| || |  ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| || |||||||||||| ||||||||    
T  28227172 ctttaccataactgcccttgtgatgtcgcacatgagaaggttccacatcatagaaaattggcaaaacaaggcgccgattttccttgaagcaatgaatgat 28227073  T
Q  310 gtggacaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||||||| ||||| |||||||||||||||||||||||| |||||    
T  28227072 gtggacaagttcgtccaagcaaaatgaagaagaagcataattgat 28227028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 354
Target Start/End: Complemental strand, 28185787 - 28185444
Alignment:
Q  14 agatgaaacagttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtaaagtggggtacctagta---ttgaaatggtggc 110  Q
    |||||||||||| ||| ||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||| || |   |||||||||||||    
T  28185787 agatgaaacagtaagataatagaatattaaagagatatgacatatgtaagaatgtaaaacatgagtgaagtggggtacccagcaggattgaaatggtggc 28185688  T
Q  111 cagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgcttggcaagtgc 210  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||||||| |||||||||||| ||||||||||| |||  ||||| |   | |||||    
T  28185687 cagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgctatccttgttattttggaacttctttatatgatcatccagtgc 28185588  T
Q  211 tttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatg 310  Q
    |||||||||||| ||    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||   |||||||||||||| |||||||    
T  28185587 tttaccataactgcccgtgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagttaatgatg 28185488  T
Q  311 tggacaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    ||||||| ||||| |||||||||||||||||||||||| |||||    
T  28185487 tggacaagttcgtccaagcaaaatgaagaagaagcataattgat 28185444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 14 - 354
Target Start/End: Complemental strand, 28181532 - 28181192
Alignment:
Q  14 agatgaaacagttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtaaagtggggtacctagtattgaaatggtggccag 113  Q
    |||| |||||||| |||||||||| ||| ||||| ||| || |||||  |||||||||||||||||  | |  ||||||||| |||||  ||||||||||    
T  28181532 agataaaacagttcgaaaatagaacattcaagaaatatcacctatgtttgaatgtaaaacatgagtgcactacggtacctaggattgatttggtggccag 28181433  T
Q  114 agaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgcttggcaagtgcttt 213  Q
    ||||||||||||| |||||||||||  ||||||||||||||||||| || ||||||| |||| |||||||||||||||| ||||| |   | ||||||||    
T  28181432 agaagttagcagtttgagtaagagcaatcttccatttctgcaacctatccatgctatgcttgttattttggaacctctctatatgatcatccagtgcttt 28181333  T
Q  214 accataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtgg 313  Q
    ||||||||| || |  |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||   |||||||||||||||||||||||||    
T  28181332 accataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagtgaatgatgtgg 28181233  T
Q  314 acaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||| ||||| |||||||||||||||||||||||| |||||    
T  28181232 acaagttcgtccaagcaaaatgaagaagaagcataattgat 28181192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 56 - 354
Target Start/End: Complemental strand, 28243180 - 28242882
Alignment:
Q  56 tatgtaagaatgtaaaacatgagtaaagtggggtacctagtattgaaatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgca 155  Q
    ||||||||||||  |||||||||| |||||| |||||||| | ||||||||||||||||||||||||| || ||||| |||||  |||||||||||||||    
T  28243180 tatgtaagaatgctaaacatgagttaagtggtgtacctagaactgaaatggtggccagagaagttagctgtttgagttagagcactcttccatttctgca 28243081  T
Q  156 acctctctatgctatccttgctattttggaacctctcaatatgcttggcaagtgctttaccataacttccatcttgatgtcgcacgtgagaaggttccac 255  Q
    ||||||| ||| ||||| |||||||||||||| ||||||||||||  || ||||||||||||||||| |||   ||||||| ||||| ||||||||||||    
T  28243080 acctctccatgttatccgtgctattttggaacttctcaatatgctcagccagtgctttaccataactgccaatctgatgtctcacgttagaaggttccac 28242981  T
Q  256 gtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
     |||||||||||||||||||||||||| |||| || |||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||    
T  28242980 atcatagaaaattggcaaaactaggcgtccatttttcttgcagcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgat 28242882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 55 - 348
Target Start/End: Original strand, 28297523 - 28297816
Alignment:
Q  55 atatgtaagaatgtaaaacatgagtaaagtggggtacctagtattgaaatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgc 154  Q
    |||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||    
T  28297523 atatttaagaatgcaaaacatgagtgaagtggggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgc 28297622  T
Q  155 aacctctctatgctatccttgctattttggaacctctcaatatgcttggcaagtgctttaccataacttccatcttgatgtcgcacgtgagaaggttcca 254  Q
    |||||||| ||| ||| |||| ||||||||||| |||| ||||| |   | ||||||||| |||||||||||| |||||||||||| |||||||||||||    
T  28297623 aacctctccatgttattcttgttattttggaacttctctatatgatcatccagtgctttagcataacttccatgttgatgtcgcacatgagaaggttcca 28297722  T
Q  255 cgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcata 348  Q
    | ||||| ||||| ||||||||||| || | |  ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  28297723 catcataaaaaatcggcaaaactagacggctactttccttgaagcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcata 28297816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 55 - 348
Target Start/End: Complemental strand, 28514550 - 28514257
Alignment:
Q  55 atatgtaagaatgtaaaacatgagtaaagtggggtacctagtattgaaatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgc 154  Q
    |||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||    
T  28514550 atatttaagaatgcaaaacatgagtgaagtggggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgc 28514451  T
Q  155 aacctctctatgctatccttgctattttggaacctctcaatatgcttggcaagtgctttaccataacttccatcttgatgtcgcacgtgagaaggttcca 254  Q
    |||||||| ||| ||| |||| ||||||||||| |||| ||||| |   | ||||||||| |||||||||||| |||||||||||| |||||||||||||    
T  28514450 aacctctccatgttattcttgttattttggaacttctctatatgatcatccagtgctttagcataacttccatgttgatgtcgcacatgagaaggttcca 28514351  T
Q  255 cgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcata 348  Q
    | ||||| ||||| ||||||||||| || | |  ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  28514350 catcataaaaaatcggcaaaactagacggctactttccttgaagcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcata 28514257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 14 - 354
Target Start/End: Complemental strand, 28325892 - 28325559
Alignment:
Q  14 agatgaaacagttagaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtaaagtggggtacctagtattgaaatggtggccag 113  Q
    ||||||| | |||||||||||||| ||||||||| |||   |||||||||||   ||||||| ||| |||| || |||| || | ||||||||||||| |    
T  28325892 agatgaatcggttagaaaatagaaaattaaagaaatat---atatgtaagaacacaaaacattagttaagtaggttacccaggactgaaatggtggcctg 28325796  T
Q  114 agaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgcttggcaagtgcttt 213  Q
    ||||||||||||| |||||||||||  |||||||||||||||||||||| ||||||||| |||||||    |||||||||||||||| ||| ||||||||    
T  28325795 agaagttagcagtttgagtaagagccatcttccatttctgcaacctctccatgctatccgtgctatt----aacctctcaatatgctcggccagtgcttt 28325700  T
Q  214 accataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtgg 313  Q
    ||||||||| || |  |||||||||||||||||||||||||| || ||||||| |||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  28325699 accataactgcccttgtgatgtcgcacgtgagaaggttccacatcgtagaaaactggctaaactaggcgcccattttctttgaagcagtgaataatgtgg 28325600  T
Q  314 acaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||| ||| | ||||||||| |||||||||||||| |||||    
T  28325599 acaagttcatccaagcaaaaggaagaagaagcataattgat 28325559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 27 - 354
Target Start/End: Complemental strand, 28234968 - 28234642
Alignment:
Q  27 agaaaatagaatattaaagaagtatgacatatgtaagaatgtaaaacatgagtaaagtggggtacctagtattgaaatggtggccagagaagttagcagt 126  Q
    ||||||||||  |||||||||  || | || |||| ||||| |||| |||||  || ||| |||||  | |||||||||||||||||| |||||||  ||    
T  28234968 agaaaatagagaattaaagaaacattatatttgtatgaatgaaaaatatgagggaattggtgtaccctggattgaaatggtggccagaaaagttagatgt 28234869  T
Q  127 ctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgcttggcaagtgctttaccataacttcca 226  Q
     |||||||||||  |||||||||||||||||||||| ||| |||||||| ||||||||||| |||  ||||| |   | ||||||||||||||||| ||     
T  28234868 ttgagtaagagccatcttccatttctgcaacctctccatgttatccttgttattttggaacttctttatatgatcatccagtgctttaccataactgccc 28234769  T
Q  227 tcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtggacaaattcgttca 326  Q
    |  |||||||||||||||||||||||||| |||||||||||||||||||||||||| | || ||||| |||||| | |||||||||||||| ||||| ||    
T  28234768 ttgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactaggcgtctattttcctcgaagca-taaatgatgtggacaagttcgtcca 28234670  T
Q  327 agcaaaatgaagaagaagcatagttgat 354  Q
    |||||||||||||||||||||| |||||    
T  28234669 agcaaaatgaagaagaagcataattgat 28234642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 134 - 348
Target Start/End: Complemental strand, 26949959 - 26949745
Alignment:
Q  134 agagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgcttggcaagtgctttaccataacttccatcttgat 233  Q
    |||||| ||||||||||| |||||| ||| ||| | |  ||||| ||||||||||||||   |||||| |||||||||| |||||||||   ||  ||||    
T  26949959 agagctatcttccatttcagcaaccgctccatgttttttttgctcttttggaacctctcttcatgcttagcaagtgcttcaccataactataattctgat 26949860  T
Q  234 gtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtggacaaattcgttcaagcaaaa 333  Q
    ||||||||||||||||||| || |||||||||| ||||| ||| ||||| || | |||||||||| |||||||||| ||||||| |||||  || |||||    
T  26949859 gtcgcacgtgagaaggttctacatcatagaaaactggcagaacaaggcgacctttttccttgaagtagtgaatgatatggacaagttcgtctaaacaaaa 26949760  T
Q  334 tgaagaagaagcata 348  Q
    |||||||||||||||    
T  26949759 tgaagaagaagcata 26949745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 97 - 351
Target Start/End: Complemental strand, 26848995 - 26848741
Alignment:
Q  97 attgaaatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaata 196  Q
    |||||||||||||||||| ||||||||||  ||  |||||||| ||||||||||  |||| | ||| ||||| |||||| ||||||| |||  |||   |    
T  26848995 attgaaatggtggccagataagttagcagcatggttaagagctttcttccatttacgcaaacgctccatgctttccttgttattttgaaacacctcttca 26848896  T
Q  197 tgcttggcaagtgctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttga 296  Q
    ||||| |||||||||| ||||||||| | ||  ||||||||||| ||||||||||| | | |||||||||  || | ||| | ||  || | |||||||     
T  26848895 tgcttagcaagtgcttcaccataactactattctgatgtcgcacatgagaaggttctatgccatagaaaacaggaataaccatgctacccttttccttgg 26848796  T
Q  297 agcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagtt 351  Q
    |||| |||||||||||||||| ||||| ||| ||||| |||||||  ||||||||    
T  26848795 agcaatgaatgatgtggacaagttcgtccaaacaaaacgaagaagtggcatagtt 26848741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 351
Target Start/End: Complemental strand, 27214743 - 27214498
Alignment:
Q  109 gccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgcttggcaagt 208  Q
    |||||| ||||||||||  ||  |||||||| |||||||||||||||||| ||| ||| | |||||| ||||||| ||||||||   |||||| |||||     
T  27214743 gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgcttagcaagc 27214644  T
Q  209 gctttaccataact-tccatctt--gatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaa 305  Q
    |||| ||||||||| |   | ||  ||||||||| |||||||||||| ||| |||||||||  || | ||| ||||| || | ||||||| |||| |||     
T  27214643 gcttcaccataactgttgttgttcagatgtcgcaagtgagaaggttcaacgccatagaaaacaggtagaacaaggcgacctttttccttggagcaatgag 27214544  T
Q  306 tgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagtt 351  Q
    |||||||||||| ||||| ||| ||||||||||||| |||||||||    
T  27214543 tgatgtggacaagttcgtccaaacaaaatgaagaagtagcatagtt 27214498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 351
Target Start/End: Original strand, 27234485 - 27234730
Alignment:
Q  109 gccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgcttggcaagt 208  Q
    |||||| ||||||||||  ||  |||||||| |||||||||||||||||| ||| ||| | |||||| ||||||| ||||||||   |||||| |||||     
T  27234485 gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgcttagcaagc 27234584  T
Q  209 gctttaccataact-tccatctt--gatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaa 305  Q
    |||| ||||||||| |   | ||  ||||||||| |||||||||||| ||| |||||||||  || | ||| ||||| || | ||||||| |||| |||     
T  27234585 gcttcaccataactgttgttgttcagatgtcgcaagtgagaaggttcaacgccatagaaaacaggtagaacaaggcgacctttttccttggagcaatgag 27234684  T
Q  306 tgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagtt 351  Q
    |||||||||||| ||||| ||| ||||||||||||| |||||||||    
T  27234685 tgatgtggacaagttcgtccaaacaaaatgaagaagtagcatagtt 27234730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 97 - 252
Target Start/End: Complemental strand, 26959501 - 26959346
Alignment:
Q  97 attgaaatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaata 196  Q
    |||||||||||||||||| ||||||||||  ||  |||||||| ||||||||||| |||||| ||| ||| | |||||||||||||| |||  |||   |    
T  26959501 attgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccgctccatgttttccttgctattttgaaactgctcttca 26959402  T
Q  197 tgcttggcaagtgctttaccataacttccatcttgatgtcgcacgtgagaaggttc 252  Q
    ||||| ||||| |||| ||||||||| |||| | | | |||||| |||||||||||    
T  26959401 tgcttagcaagcgcttcaccataactgccatttagttttcgcacatgagaaggttc 26959346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 101 - 351
Target Start/End: Original strand, 27337921 - 27338171
Alignment:
Q  101 aaatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgct 200  Q
    ||||||||||| |||||||||||||  || ||||||||  |||||||||||| ||||||||| ||| | |||||| ||||||||||| | ||   |||||    
T  27337921 aaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgct 27338020  T
Q  201 tggcaag-tgctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagc 299  Q
    | | ||| ||||  ||||||||| |||   |||||||| ||||||| ||| ||| |  |||||||||  ||||||||    |  ||   |  |||| |||    
T  27338021 tagtaagatgctc-accataactcccagtctgatgtcgtacgtgagtaggatccgcaccatagaaaacaggcaaaaccgaacaaccccttgtcttgtagc 27338119  T
Q  300 agtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagtt 351  Q
    |||||||||||||||||| ||||| |||||||||||||||||| ||||||||    
T  27338120 agtgaatgatgtggacaagttcgtccaagcaaaatgaagaagatgcatagtt 27338171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 101 - 351
Target Start/End: Original strand, 27398661 - 27398911
Alignment:
Q  101 aaatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgct 200  Q
    ||||||||||| |||||||||||||  || ||||||||  |||||||||||| ||||||||| ||| | |||||| ||||||||||| | ||   |||||    
T  27398661 aaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgct 27398760  T
Q  201 tggcaag-tgctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagc 299  Q
    | | ||| ||||  ||||||||| |||   |||||||| ||||||| ||| ||| |  |||||||||  ||||||||    |  ||   |  |||| |||    
T  27398761 tagtaagatgctc-accataactcccagtctgatgtcgtacgtgagtaggatccgcaccatagaaaacaggcaaaaccgaacaaccccttgtcttgtagc 27398859  T
Q  300 agtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagtt 351  Q
    |||||||||||||||||| ||||| |||||||||||||||||| ||||||||    
T  27398860 agtgaatgatgtggacaagttcgtccaagcaaaatgaagaagatgcatagtt 27398911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 103 - 352
Target Start/End: Complemental strand, 31284617 - 31284368
Alignment:
Q  103 atggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgcttg 202  Q
    ||||| |||||| |||||||| |  |||||||||||| |||||||||| |||||||| || ||   |||  |  ||| ||||||||||||   ||||||     
T  31284617 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 31284518  T
Q  203 gcaagtgctttaccataacttccatct-tgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcag 301  Q
    || | |||||  |||||||| || ||| ||||||||||| |||||||| |||||| || ||||||  |||||||| ||||| |||| || |||  |  ||    
T  31284517 gccaatgcttctccataactacc-tctatgatgtcgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaag 31284419  T
Q  302 tgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttg 352  Q
    |||||||||||||||| ||||| ||| ||||| || ||||| |||||||||    
T  31284418 tgaatgatgtggacaagttcgtccaaacaaaacgacgaagaggcatagttg 31284368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 350
Target Start/End: Complemental strand, 25071994 - 25071741
Alignment:
Q  97 attgaaatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaata 196  Q
    ||||||||| || ||||| ||||||||||  |   |||||||| |||||||| || |||||| ||| |||   |||||| ||||||| |||| |||   |    
T  25071994 attgaaatgatgtccagataagttagcagcttcgttaagagctttcttccatgtcagcaaccgctccatgtgttccttgttattttgaaacccctcttca 25071895  T
Q  197 tgcttggcaagtgctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttga 296  Q
    ||||| |||| || || |||||||||  |||   | | |||||| || ||||||||   | ||||||||||||| | ||| ||||| |  | ||||||||    
T  25071894 tgcttagcaaatgattcaccataactgtcattcagttttcgcacctgcgaaggttcggtgccatagaaaattggtagaacaaggcgactcttttccttga 25071795  T
Q  297 agcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagt 350  Q
    || |||||||||||||||||| |||||  || ||||||||||||||||||||||    
T  25071794 agtagtgaatgatgtggacaagttcgtctaaacaaaatgaagaagaagcatagt 25071741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 214 - 354
Target Start/End: Complemental strand, 26937312 - 26937172
Alignment:
Q  214 accataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtgg 313  Q
    ||||||||| |||  ||| ||||| ||||||||||| ||||| ||||||||||| ||||||| |||  | || | |  ||||||||||| || |||||||    
T  26937312 accataactcccagtttggtgtcgaacgtgagaaggatccacttcatagaaaataggcaaaattagatgaccttttgtcttgaagcagtcaacgatgtgg 26937213  T
Q  314 acaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||| ||||| ||| |||||||||||||  |||||||||||    
T  26937212 acaagttcgtccaaacaaaatgaagaagtggcatagttgat 26937172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 354
Target Start/End: Complemental strand, 28150151 - 28150015
Alignment:
Q  216 cataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtggac 315  Q
    ||||||| |||  |||||| ||||| |||||| |||| |  ||||||||||| |||| ||||| ||  || | | |||||||||||||||| ||||||||    
T  28150151 cataactcccagtttgatgccgcacctgagaatgttcaa--tcatagaaaataggcagaactaagcaaccctttgccttgaagcagtgaataatgtggac 28150054  T
Q  316 aaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    || ||||| ||| |||||||||||||||| |||||||||    
T  28150053 aagttcgtccaaacaaaatgaagaagaagtatagttgat 28150015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 208 - 354
Target Start/End: Original strand, 27718342 - 27718488
Alignment:
Q  208 tgctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatg 307  Q
    ||||| ||||||||| || |  ||||||||||||| || |||||||||| |  ||||||  |||||||| ||||| || | |  |||| ||||||||||     
T  27718342 tgcttcaccataactacctttctgatgtcgcacgttagtaggttccacgccgaagaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaatt 27718441  T
Q  308 atgtggacaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||||||||| ||||| ||| ||||| |||||||| |||||||||||    
T  27718442 atgtggacaagttcgtccaaacaaaacgaagaagaggcatagttgat 27718488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 317
Target Start/End: Complemental strand, 26811809 - 26811624
Alignment:
Q  132 taagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgcttggcaagtgctttaccataacttccatcttg 231  Q
    |||||||| ||||||||||||||||||  || ||| | |||||| ||||||||||| | ||   |  ||  | |||||||| ||||||  |   || |||    
T  26811809 taagagctatcttccatttctgcaaccgatccatgttttccttgttattttggaacatttcttcaaactcagtaagtgcttcaccatacttgttattttg 26811710  T
Q  232 atgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtggacaa 317  Q
    ||||||||||||||||||||||||  ||||||||| ||| | ||| ||||| || | |||||||||| ||| ||||||||||||||    
T  26811709 atgtcgcacgtgagaaggttccacaccatagaaaactggtagaacaaggcgacctttttccttgaagtagttaatgatgtggacaa 26811624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 354
Target Start/End: Original strand, 26341928 - 26342043
Alignment:
Q  242 tgagaaggttccacgtcatagaaaattggcaaaactaggcg-cccatatt--ccttgaagcagtgaatgatgtggacaaattcgttcaagcaaaatgaag 338  Q
    ||||||||||||| |||||||||||  ||||||| |  ||| ||| | ||  |||||||||| |||||||||||||||| ||||| ||| ||||| ||||    
T  26341928 tgagaaggttccatgtcatagaaaacaggcaaaattttgcgacccttctttgccttgaagcaatgaatgatgtggacaagttcgtccaaacaaaacgaag 26342027  T
Q  339 aagaagcatagttgat 354  Q
    ||||||||||||||||    
T  26342028 aagaagcatagttgat 26342043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 97 - 252
Target Start/End: Complemental strand, 26636025 - 26635870
Alignment:
Q  97 attgaaatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaata 196  Q
    |||||||||||||||||| ||||||||||  ||  |||||||| ||||||||||| |||||| ||| ||| | |||||||||||||| |||   ||   |    
T  26636025 attgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccatgttttccttgctattttgaaactgatcttca 26635926  T
Q  197 tgcttggcaagtgctttaccataacttccatcttgatgtcgcacgtgagaaggttc 252  Q
    ||||| ||||| |||| |||||||||  ||| | | | |||||| |||||||||||    
T  26635925 tgcttagcaagcgcttcaccataactgtcatttagttttcgcacatgagaaggttc 26635870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 97 - 252
Target Start/End: Complemental strand, 26741991 - 26741836
Alignment:
Q  97 attgaaatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaata 196  Q
    |||||||||||||||||| ||||||||||  ||  |||||||| ||||||||||| |||||| ||| ||| | |||||||||||||| |||   ||   |    
T  26741991 attgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccatgttttccttgctattttgaaactgatcttca 26741892  T
Q  197 tgcttggcaagtgctttaccataacttccatcttgatgtcgcacgtgagaaggttc 252  Q
    ||||| ||||| |||| |||||||||  ||| | | | |||||| |||||||||||    
T  26741891 tgcttagcaagcgcttcaccataactgtcatttagttttcgcacatgagaaggttc 26741836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 352
Target Start/End: Complemental strand, 25579921 - 25579799
Alignment:
Q  230 tgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtggacaaattcgttcaagc 329  Q
    |||||||| | ||||| ||||||||| ||||||||||  ||||| |||| ||  |  | |  |||| ||||||||||||||||||||| ||||| ||| |    
T  25579921 tgatgtcgtatgtgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaac 25579822  T
Q  330 aaaatgaagaagaagcatagttg 352  Q
    ||||||||||||| |||||||||    
T  25579821 aaaatgaagaagatgcatagttg 25579799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 352
Target Start/End: Complemental strand, 26049063 - 26048925
Alignment:
Q  214 accataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtgg 313  Q
    |||||||||||||   |||||||| | ||||| ||||||||| ||||| ||||  ||||| |||| ||  |  | |  |||| |||||||||||||||||    
T  26049063 accataacttccactatgatgtcgtatgtgagtaggttccacatcataaaaaacgggcaatactaagcaactctttgtcttgtagcagtgaatgatgtgg 26048964  T
Q  314 acaaattcgttcaagcaaaatgaagaagaagcatagttg 352  Q
    |||| ||||| ||| |||||||||||||| |||||||||    
T  26048963 acaagttcgtccaaacaaaatgaagaagatgcatagttg 26048925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 352
Target Start/End: Complemental strand, 26070232 - 26070094
Alignment:
Q  214 accataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtgg 313  Q
    |||||||||||||   |||||||| | ||||| ||||||||| ||||| ||||  ||||| |||| ||  |  | |  |||| |||||||||||||||||    
T  26070232 accataacttccactatgatgtcgtatgtgagtaggttccacatcataaaaaacgggcaatactaagcaactctttgtcttgtagcagtgaatgatgtgg 26070133  T
Q  314 acaaattcgttcaagcaaaatgaagaagaagcatagttg 352  Q
    |||| ||||| ||| |||||||||||||| |||||||||    
T  26070132 acaagttcgtccaaacaaaatgaagaagatgcatagttg 26070094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 352
Target Start/End: Complemental strand, 26824014 - 26823920
Alignment:
Q  258 catagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttg 352  Q
    |||||||||  |||||||| |||||||| | ||||||| ||  | ||||||||||||||| ||||| ||| |||||||||||||| |||||||||    
T  26824014 catagaaaacaggcaaaacgaggcgccccttttccttgtagacgcgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttg 26823920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 354
Target Start/End: Original strand, 27610965 - 27611111
Alignment:
Q  208 tgctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatg 307  Q
    ||||| ||||||||| || |  ||||||||||| | || |||||||||| |  ||||||  |||||||| ||||| || | |  |||| ||||||||||     
T  27610965 tgcttcaccataactacctttctgatgtcgcactttagtaggttccacgccgaagaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaatt 27611064  T
Q  308 atgtggacaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||||||||| ||||| ||| ||||| |||||||| |||||||||||    
T  27611065 atgtggacaagttcgtccaaacaaaacgaagaagaggcatagttgat 27611111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 354
Target Start/End: Original strand, 27677661 - 27677723
Alignment:
Q  292 cttgaagcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||| ||||||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||    
T  27677661 cttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgat 27677723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 354
Target Start/End: Complemental strand, 27679086 - 27679024
Alignment:
Q  292 cttgaagcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||| ||||||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||    
T  27679086 cttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgat 27679024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 354
Target Start/End: Original strand, 27724808 - 27724954
Alignment:
Q  208 tgctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatg 307  Q
    ||||| ||||||||| || |  ||||||||||||| || |||||||||| |  ||||||  |||||||| ||||| || | |  |||| ||||||||||     
T  27724808 tgcttcaccataactacctttctgatgtcgcacgttagtaggttccacgccgaagaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaatt 27724907  T
Q  308 atgtggacaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||||||||| ||||| ||| ||||| |||||| | |||||||||||    
T  27724908 atgtggacaagttcgtccaaacaaaacgaagaataggcatagttgat 27724954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 351
Target Start/End: Original strand, 28098301 - 28098475
Alignment:
Q  177 tattttggaacctctcaatatgcttggcaagtgctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaac 276  Q
    ||||||||||||||||   |||||| || | ||||| ||||||||| ||    |||||||||||||||||||||||||||||| | ||||| || |||||    
T  28098301 tattttggaacctctcttcatgcttagctaatgcttcaccataactccccgtctgatgtcgcacgtgagaaggttccacgtcacaaaaaataggaaaaac 28098400  T
Q  277 taggcgcccatattccttgaagcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagtt 351  Q
     | ||  || | ||| | | | | ||||||||||||||||| ||| | ||| |||||  ||||||||||||||||    
T  28098401 gaagcaacccttttcttcgtaacggtgaatgatgtggacaagttcatccaaacaaaacaaagaagaagcatagtt 28098475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 97 - 350
Target Start/End: Complemental strand, 26975387 - 26975134
Alignment:
Q  97 attgaaatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaata 196  Q
    |||||||||||||||||| ||||||||||  ||  |||||||| ||||||||||  |||||| ||| | | | || ||  ||||||| |||| |||   |    
T  26975387 attgaaatggtggccagataagttagcagcttggttaagagctttcttccatttaagcaaccgctccaagttttcatttttattttgaaacccctcttca 26975288  T
Q  197 tgcttggcaagtgctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttga 296  Q
    ||||| |||||| ||| |||||||||  |||   | |  ||||| |||||||||||   | |||||||||  || | ||||| ||  || | ||| |||     
T  26975287 tgcttagcaagtacttcaccataactgtcattcagtttacgcacatgagaaggttctgtgccatagaaaacaggaataactatgctacccttttcattgg 26975188  T
Q  297 agcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagt 350  Q
    | || |||||||||||||||| ||||| ||| ||||||||||||||||||||||    
T  26975187 aacaatgaatgatgtggacaagttcgtccaaacaaaatgaagaagaagcatagt 26975134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 293 - 354
Target Start/End: Complemental strand, 28139680 - 28139619
Alignment:
Q  293 ttgaagcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||||||||| |||||||||||||| ||||| ||||||||| |||||||| |||||||||||    
T  28139680 ttgaagcagtcaatgatgtggacaagttcgtccaagcaaaacgaagaagaggcatagttgat 28139619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 292 - 352
Target Start/End: Complemental strand, 25481882 - 25481822
Alignment:
Q  292 cttgaagcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttg 352  Q
    |||| ||||||||||||||||||||| ||||| ||| |||||||||||||| |||||||||    
T  25481882 cttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttg 25481822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 292 - 352
Target Start/End: Complemental strand, 26143005 - 26142945
Alignment:
Q  292 cttgaagcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttg 352  Q
    |||| ||||||||||||||||||||| ||||| ||| |||||||||||||| |||||||||    
T  26143005 cttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttg 26142945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 26056061 - 26056006
Alignment:
Q  297 agcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttg 352  Q
    ||||||||||||||||||||| ||||| ||| |||||||||||||| |||||||||    
T  26056061 agcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttg 26056006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 26076031 - 26075976
Alignment:
Q  297 agcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttg 352  Q
    ||||||||||||||||||||| ||||| ||| |||||||||||||| |||||||||    
T  26076031 agcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttg 26075976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 354
Target Start/End: Original strand, 27592983 - 27593129
Alignment:
Q  208 tgctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatg 307  Q
    ||||| ||||||||| || |  ||||||||||| |||||||| |||||  || ||||||  ||||||||  |||| || | |  |||| |||| ||||||    
T  27592983 tgcttcaccataactacctttatgatgtcgcacatgagaaggatccacaccaaagaaaacaggcaaaacagggcgaccctttgtcttgtagcaatgaatg 27593082  T
Q  308 atgtggacaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||||| ||| ||||| ||| ||||| |||||||| |||||||||||    
T  27593083 atgtggtcaagttcgtccaaacaaaacgaagaagaggcatagttgat 27593129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 292 - 354
Target Start/End: Original strand, 27706449 - 27706511
Alignment:
Q  292 cttgaagcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||| ||||||||||||||||||||| ||||| ||| |||||||||||||| |||||| ||||    
T  27706449 cttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcataggtgat 27706511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 2184417 - 2184369
Alignment:
Q  303 gaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagtt 351  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||||||    
T  2184417 gaatgatgtggacaagttcgtccaaacaaaatgaagaagaagcatagtt 2184369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 292 - 352
Target Start/End: Complemental strand, 25538680 - 25538620
Alignment:
Q  292 cttgaagcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttg 352  Q
    |||| ||||||||||||| ||||||| ||||| ||| |||||||||||||| |||||||||    
T  25538680 cttgtagcagtgaatgatctggacaagttcgtccaaacaaaatgaagaagatgcatagttg 25538620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 352
Target Start/End: Complemental strand, 26623212 - 26623056
Alignment:
Q  196 atgcttggcaagtgctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttg 295  Q
    |||||| ||||||||||  |||||||| |||  |||||| || | ||||| ||| |||||| ||||||| |  |||||||| || || || | |   |||    
T  26623212 atgcttagcaagtgcttcgccataactcccagtttgatgccgtatgtgagtaggatccacgccatagaagacgggcaaaacgagacgaccctttgttttg 26623113  T
Q  296 aagcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttg 352  Q
     ||||||||||||||||||||| ||| | ||| |||||||||||| | |||||||||    
T  26623112 tagcagtgaatgatgtggacaagttcatccaaacaaaatgaagaatatgcatagttg 26623056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 352
Target Start/End: Complemental strand, 26729190 - 26729034
Alignment:
Q  196 atgcttggcaagtgctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttg 295  Q
    |||||| ||||||||||  |||||||| |||  |||||| || | ||||| ||| |||||| ||||||| |  |||||||| || || || | |   |||    
T  26729190 atgcttagcaagtgcttcgccataactcccagtttgatgccgtatgtgagtaggatccacgccatagaagacgggcaaaacgagacgaccctttgttttg 26729091  T
Q  296 aagcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttg 352  Q
     ||||||||||||||||||||| ||| | ||| |||||||||||| | |||||||||    
T  26729090 tagcagtgaatgatgtggacaagttcatccaaacaaaatgaagaatatgcatagttg 26729034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 27698546 - 27698602
Alignment:
Q  297 agcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttga 353  Q
    |||||||||| |||||||||| ||||| ||| |||||||||||||| ||||||||||    
T  27698546 agcagtgaattatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttga 27698602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 26656124 - 26656069
Alignment:
Q  297 agcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttg 352  Q
    |||| |||||||||||||||| ||||| ||| |||||||||||||| |||||||||    
T  26656124 agcaatgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttg 26656069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 26762095 - 26762040
Alignment:
Q  297 agcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttg 352  Q
    |||| |||||||||||||||| ||||| ||| |||||||||||||| |||||||||    
T  26762095 agcaatgaatgatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttg 26762040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 29826249 - 29826183
Alignment:
Q  210 ctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaac 276  Q
    ||||||||||||| |||   ||||||||||| |||||||| ||||| ||||||||||| ||||||||    
T  29826249 ctttaccataactcccagtctgatgtcgcacatgagaaggatccacatcatagaaaataggcaaaac 29826183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 26617922 - 26617865
Alignment:
Q  132 taagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacct 189  Q
    |||||||| |||||||||||||||||| ||| ||| | |||||| |||||||||||||    
T  26617922 taagagctatcttccatttctgcaaccgctccatgttttccttgttattttggaacct 26617865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 26723850 - 26723793
Alignment:
Q  132 taagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacct 189  Q
    |||||||| |||||||||||||||||| ||| ||| | |||||| |||||||||||||    
T  26723850 taagagctatcttccatttctgcaaccgctccatgttttccttgttattttggaacct 26723793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 354
Target Start/End: Complemental strand, 26646669 - 26646557
Alignment:
Q  242 tgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaag 341  Q
    |||| ||| |||||| |||||||||  |||||||| || || || | |  |||| |||| |||||||||||||||| ||||| ||| ||||||  |||||    
T  26646669 tgagtaggatccacgccatagaaaacgggcaaaacgagacgaccctttgtcttgtagcaatgaatgatgtggacaagttcgtccaaacaaaatttagaag 26646570  T
Q  342 aagcatagttgat 354  Q
    | |||||||||||    
T  26646569 aggcatagttgat 26646557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 354
Target Start/End: Complemental strand, 26752637 - 26752525
Alignment:
Q  242 tgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaag 341  Q
    |||| ||| |||||| |||||||||  |||||||| || || || | |  |||| |||| |||||||||||||||| ||||| ||| ||||||  |||||    
T  26752637 tgagtaggatccacgccatagaaaacgggcaaaacgagacgaccctttgtcttgtagcaatgaatgatgtggacaagttcgtccaaacaaaatttagaag 26752538  T
Q  342 aagcatagttgat 354  Q
    | |||||||||||    
T  26752537 aggcatagttgat 26752525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 2185027 - 2184980
Alignment:
Q  303 gaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagt 350  Q
    ||||||| ||||||| ||||| ||| ||||||||||||||||||||||    
T  2185027 gaatgatatggacaagttcgtccaaacaaaatgaagaagaagcatagt 2184980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 26884300 - 26884243
Alignment:
Q  297 agcagtgaatga--tgtggacaaattcgttcaagcaaaatgaagaagaagcatagttg 352  Q
    ||||||||||||  ||||||||| ||||| ||| |||||||||||||| |||||||||    
T  26884300 agcagtgaatgacatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttg 26884243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 26937441 - 26937376
Alignment:
Q  97 attgaaatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctc 162  Q
    |||||||||||||||||| ||||| || |  ||  |||||||| ||||||||||| ||||||||||    
T  26937441 attgaaatggtggccagacaagtttgccgcttggttaagagctatcttccatttccgcaacctctc 26937376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 27665166 - 27665223
Alignment:
Q  294 tgaagcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagtt 351  Q
    ||||||| |||||||||||||||| ||| |  || ||||||||||||| |||||||||    
T  27665166 tgaagcaatgaatgatgtggacaagttcatctaaacaaaatgaagaagtagcatagtt 27665223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 28150284 - 28150235
Alignment:
Q  74 atgagtaaagtggggtacctagtattgaaatggtggccagagaagttagc 123  Q
    |||||| ||||||| ||||||| ||||||||||||||| || ||||||||    
T  28150284 atgagtgaagtgggatacctaggattgaaatggtggccggacaagttagc 28150235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 102 - 354
Target Start/End: Original strand, 28164207 - 28164458
Alignment:
Q  102 aatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgctt 201  Q
    |||||| ||| || ||||||||||  || || |||||| |||||||||  ||||| | ||| ||| | | |||| |||||||||||||||||  ||||||    
T  28164207 aatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacctctcaccatgctt 28164306  T
Q  202 ggcaagtgctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcag 301  Q
     | |||  |||| |||||||| ||    ||||||||||| | || ||| |||||| || ||||||  |||||||||||||| || | |  |||| |||||    
T  28164307 agtaagatctttgccataactccctgtatgatgtcgcacatcagtaggatccacgcca-agaaaacaggcaaaactaggcgaccctttgtcttgtagcag 28164405  T
Q  302 tgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||||||||||||||| ||||| ||| |||||||||||||| |||||||||||    
T  28164406 tgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgat 28164458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 352
Target Start/End: Original strand, 28127523 - 28127773
Alignment:
Q  102 aatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgctt 201  Q
    |||||| ||| || ||||||||||  || || |||||| |||||||||  ||||| | ||| ||| | | |||| ||||||||||||||||   ||||||    
T  28127523 aatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacctctctccatgctt 28127622  T
Q  202 ggcaagtgctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcag 301  Q
     |||||  ||| ||||||||| ||    |||| |||||| | || ||| |||||| || ||||||  |||||||||||||| || | |  |||| |||||    
T  28127623 agcaagctcttcaccataactccctgtatgatatcgcacatcagtaggatccacgccaaagaaaacaggcaaaactaggcgaccctttgtcttgtagcag 28127722  T
Q  302 tgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttg 352  Q
    ||||||||||| |||| ||||| ||| |||||||||||||| |||||||||    
T  28127723 tgaatgatgtgcacaagttcgtccaaacaaaatgaagaagaggcatagttg 28127773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 214 - 354
Target Start/End: Original strand, 268313 - 268453
Alignment:
Q  214 accataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtgg 313  Q
    ||||||||| |||  ||||||||| | ||||| ||| |||||| ||||||| |  |||||||  || || || | || |||| |||||||||||||||||    
T  268313 accataactcccactttgatgtcgtatgtgagtaggatccacgccatagaagacgggcaaaatgagacgaccctttttcttgtagcagtgaatgatgtgg 268412  T
Q  314 acaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||| ||||| ||| |||||||||||||| |||||||||||    
T  268413 acaagttcgtccaaacaaaatgaagaagaggcatagttgat 268453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 350
Target Start/End: Original strand, 5090912 - 5091059
Alignment:
Q  203 gcaagtgctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagt 302  Q
    |||||||||| |||||||||||||   |||| |||||| ||||||||||||||  |||||||||| |||||||| ||||  |||| ||||||| ||||||    
T  5090912 gcaagtgcttcaccataacttccagtctgatatcgcacatgagaaggttccacaccatagaaaataggcaaaaccaggcaaccattttccttggagcagt 5091011  T
Q  303 gaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagt 350  Q
    |||| || ||||||| ||| |  || ||||| ||||||||||||||||    
T  5091012 gaataatatggacaagttcatctaaacaaaacgaagaagaagcatagt 5091059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 214 - 354
Target Start/End: Original strand, 18655433 - 18655573
Alignment:
Q  214 accataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtgg 313  Q
    |||||||||||||  ||||||||| | ||||| ||| |||||| |||||||||  || ||||| || || || | |  |||| |||||||||||||| ||    
T  18655433 accataacttccagtttgatgtcgtatgtgagtaggatccacgccatagaaaacaggaaaaacgagacgaccctttgtcttgtagcagtgaatgatgcgg 18655532  T
Q  314 acaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||| ||||| ||| |||||||||||||| |||||||||||    
T  18655533 acaagttcgtccaaacaaaatgaagaagaggcatagttgat 18655573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 214 - 354
Target Start/End: Original strand, 18679523 - 18679663
Alignment:
Q  214 accataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtgg 313  Q
    ||||||||| |||  ||||||||  | ||||| ||| |||||| |||||||||  |||||||| || || || | |  |||| |||||||||||||||||    
T  18679523 accataactaccactttgatgtcatatgtgagtaggatccacgacatagaaaacaggcaaaacaagacgaccctttgtcttgtagcagtgaatgatgtgg 18679622  T
Q  314 acaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||| ||||| ||| |||||||||||||| |||||||||||    
T  18679623 acaagttcgtccaaacaaaatgaagaagaggcatagttgat 18679663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 354
Target Start/End: Original strand, 18699356 - 18699496
Alignment:
Q  214 accataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtgg 313  Q
    ||||||||| |||  ||||||||| | ||||| ||| || ||| |||||||||  |||||||| || || || | |  |||| ||||||||||||||||     
T  18699356 accataactcccactttgatgtcgtatgtgagtaggatctacgccatagaaaacaggcaaaacgagacgaccttttgtcttgtagcagtgaatgatgtga 18699455  T
Q  314 acaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||| ||||| ||| |||||||||||||| |||||||||||    
T  18699456 acaagttcgtccaaacaaaatgaagaagaggcatagttgat 18699496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 354
Target Start/End: Original strand, 18724041 - 18724181
Alignment:
Q  214 accataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtgg 313  Q
    ||||||||| |||  ||| ||||| | ||||  ||| |||||| |||||||||  |||||||| || || || | |  |||| ||||||| |||||||||    
T  18724041 accataactcccactttggtgtcgtatgtgactaggatccacgccatagaaaacaggcaaaacaagacgaccctttgtcttgtagcagtgcatgatgtgg 18724140  T
Q  314 acaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||| ||||||||| |||||||||||||| |||||||||||    
T  18724141 acaagttcgttcaaacaaaatgaagaagaggcatagttgat 18724181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 354
Target Start/End: Original strand, 18731460 - 18731600
Alignment:
Q  214 accataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtgg 313  Q
    ||||||||| |||  ||||||||| | ||||  ||| |||||| |||||||||  |||||||| || || || | |  |||| ||||||| |||||||||    
T  18731460 accataactcccactttgatgtcgtatgtgactaggatccacgccatagaaaacaggcaaaacaagacgaccctttgtcttgtagcagtgcatgatgtgg 18731559  T
Q  314 acaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||| ||||| ||| |||||||||||||| |||||||||||    
T  18731560 acaagttcgtccaaacaaaatgaagaagaggcatagttgat 18731600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 97 - 252
Target Start/End: Original strand, 17993536 - 17993691
Alignment:
Q  97 attgaaatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaata 196  Q
    |||||||||||||||||| ||||||||||  ||  |||||||| |||||||||||  ||||| ||| ||| | |||||||||||||| || | |||   |    
T  17993536 attgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcaacaaccgctccatgttttccttgctattttgaaaaccctcttca 17993635  T
Q  197 tgcttggcaagtgctttaccataacttccatcttgatgtcgcacgtgagaaggttc 252  Q
    ||||| |||||||||| |||||||||  |||  ||||||||||| |||||||||||    
T  17993636 tgcttagcaagtgcttcaccataactatcattctgatgtcgcacctgagaaggttc 17993691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 354
Target Start/End: Complemental strand, 3279914 - 3279766
Alignment:
Q  209 gctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttg---aagcagtgaa 305  Q
    ||||| |||||||| |||   |||||||||||||| ||||||||||| ||||||||||| || |||| |  ||| || |  || | |   ||||| ||||    
T  3279914 gctttgccataactcccagtctgatgtcgcacgtgggaaggttccacatcatagaaaataggtaaaattttgcgacccttctcttggtcgaagcaatgaa 3279815  T
Q  306 tgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||||||||||| ||||| ||| ||||||  ||||||||||||||||||    
T  3279814 tgatgtggacaagttcgtccaaacaaaatatagaagaagcatagttgat 3279766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 17993728 - 17993789
Alignment:
Q  289 ttccttgaagcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatagt 350  Q
    ||| ||| |||| |||||||||||||||| |||||  || ||||||||||||||||||||||    
T  17993728 ttcattggagcattgaatgatgtggacaagttcgtctaaacaaaatgaagaagaagcatagt 17993789  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 354
Target Start/End: Original strand, 29273739 - 29273879
Alignment:
Q  214 accataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtgg 313  Q
    ||||||||| |||  ||||||||| | ||||| ||| |||||| ||||||| |  |||||||  || || || | |  |||| |||||||||||||||||    
T  29273739 accataactcccactttgatgtcgtatgtgagtaggatccacgccatagaagacaggcaaaatgagacgaccctttgtcttgtagcagtgaatgatgtgg 29273838  T
Q  314 acaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||| ||||| ||| |||||||||||||| |||||||||||    
T  29273839 acaagttcgtccaaacaaaatgaagaagaggcatagttgat 29273879  T

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Target: scaffold0349 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 354
Target Start/End: Original strand, 14319 - 14464
Alignment:
Q  208 tgctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatg 307  Q
    ||||| ||||||||| || |  ||||||||||||| || |||||||||| |  ||||||  |||||||| ||||| || | |  |||| ||||||||||     
T  14319 tgcttcaccataactacctttctgatgtcgcacgttagtaggttccacgccgaagaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaatt 14418  T
Q  308 atgtggacaaattcgttcaagcaaaatgaagaagaagcatagttgat 354  Q
    |||||||||| ||||| ||| ||||| |||||| | |||||||||||    
T  14419 atgtggacaagttcgtccaaacaaaacgaagaa-aggcatagttgat 14464  T

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Target: scaffold0349; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 3468 - 3525
Alignment:
Q  292 cttgaagcagtgaatgatgtggacaaattcgttcaagcaaaatgaagaagaagcatag 349  Q
    |||| ||||||||||||||||||||| ||||| ||| |||||||||||||| ||||||    
T  3468 cttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatag 3525  T

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Target: scaffold0277 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 349
Target Start/End: Original strand, 4657 - 4775
Alignment:
Q  231 gatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattccttgaagcagtgaatgatgtggacaaattcgttcaagca 330  Q
    |||||||||||| || |||||||||| |  ||||||  |||||||| ||||| || | |  |||| |||||||||| |||||||||| ||||| ||| ||    
T  4657 gatgtcgcacgttagtaggttccacgccgaagaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaaca 4756  T
Q  331 aaatgaagaagaagcatag 349  Q
    ||| |||||| | ||||||    
T  4757 aaacgaagaaaaggcatag 4775  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 279
Target Start/End: Complemental strand, 16689234 - 16689164
Alignment:
Q  209 gctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactag 279  Q
    |||| |||||||||||||   ||||||| ||| || ||||| ||||||||||||||||  |||||||||||    
T  16689234 gcttcaccataacttccaatctgatgtctcacatgcgaaggatccacgtcatagaaaacaggcaaaactag 16689164  T

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