View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16229_high_3 (Length: 335)
Name: NF16229_high_3
Description: NF16229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16229_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 37616283 - 37616578
Alignment:
| Q |
15 |
tcaaacttcattatcttgtctttattgcttgaagcttggatattgaatcttaatttatgatccacatttaagatgtttaagagtaacattgctcggtttt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37616283 |
tcaaacttcattatcttgtctttattgcttgaagcttggatattgaaactt----tatgatccacatttaagatgtttaagggtaacattgctcggtttt |
37616378 |
T |
|
| Q |
115 |
ccttcatcaatattcaatgtggtgtctataaagattttggtgaaatcagtaataccagaactttgtttctcagaaagctcattagctccataattgaatt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37616379 |
ccttcatcaatattcaatgtggtgtctataaagattttggtgaaaacaataataccagaactttgtttctcagaaagctcattagctctataattgaatt |
37616478 |
T |
|
| Q |
215 |
taattaacaaagctttcacctcttctccaagtttgggtaaatgtttcaatagatttcttgaaaatgccaactcccttaattcatcaagcagcatcttgat |
314 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37616479 |
taactaacaaagctttcacctcttctccaagtttgggtaaatgtttcaatagatttcttgaaaatgccaactcccttaattcatcaagcagcatcttgat |
37616578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 15 - 317
Target Start/End: Original strand, 6173605 - 6173912
Alignment:
| Q |
15 |
tcaaacttcattatcttgtctttat-tgcttgaagcttggatattgaatcttaatttatgatccacatttaagatgtttaagagtaacattgctcggttt |
113 |
Q |
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||||||||||| ||||||| ||| ||||||||||||||| |||||||||| ||||||||||||| |||||||| |||||||||||||| | |||| |
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| T |
6173605 |
tcaaacttcataatcttgtatttggatgcttgaagcttggacattgaatctt----tatgatccacatt-aagatgttgaagagtaacattgcccagttt |
6173699 |
T |
|
| Q |
114 |
tccttcatcaatattcaatgtggtgtctataaagattttggtgaaatcagtaataccagaactttgtttctcagaaagctcattagctccataattgaat |
213 |
Q |
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||||||||||||||||| ||||| ||| | |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
6173700 |
tccttcatcaatattcactgtggcttctgtgaagattctggcgaaatcagtaataccagaactttgtttctcagaaagctcattagctctataattgagt |
6173799 |
T |
|
| Q |
214 |
ttaattaacaaagctttcacctcttctccaag---------tttgggtaaatgtttcaatagatttcttgaaaatgccaactcccttaattcatcaagca |
304 |
Q |
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|||| ||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| |||||||||||||| |||| |
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| T |
6173800 |
ttaactaataaagctttcacctcttctccaagagtcacatcattgggtaaatgtttcaataagtttcttgaaaataccaaatcccttaattcatccagca |
6173899 |
T |
|
| Q |
305 |
gcatcttgattga |
317 |
Q |
| |
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||||||||||||| |
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|
| T |
6173900 |
gcatcttgattga |
6173912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 15 - 306
Target Start/End: Original strand, 6135550 - 6135846
Alignment:
| Q |
15 |
tcaaacttcattatcttgtctttat-tgcttgaagcttggatattgaatcttaatttatgatccacatttaagatgtttaagagtaacattgctcggttt |
113 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| |||| |||||||||||||||| |||| |
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|
| T |
6135550 |
tcaaacttcattatcttgtctttcgatgcttgaagcttggatattgaatctt----tatgatccacatt-aagttgttgaagagtaacattgctcagttt |
6135644 |
T |
|
| Q |
114 |
tccttcatcaatattcaatgtggtgtctataaagattttggtgaaatcagtaataccagaactttgtttctcagaaagctcattagctccataattgaat |
213 |
Q |
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||||||||||||||||| ||| | ||| | |||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| | |
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| T |
6135645 |
tccttcatcaatattcactgtagcttctgtgaagattctagtgaaatcagtaataccggaactttgtttctcagaaagctcattagctctataattgagt |
6135744 |
T |
|
| Q |
214 |
ttaattaacaaagctttcacctcttctccaag---------tttgggtaaatgtttcaatagatttcttgaaaatgccaactcccttaattcatcaagca |
304 |
Q |
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|||| ||| |||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
6135745 |
ttaactaataaagctttcacctcttctcctagagtcacatcattgggtaaatgtttcaataagtttcttgaaaatgccaactccctcaattcatcaagca |
6135844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 22083199 - 22083128
Alignment:
| Q |
12 |
tcatcaaacttcattatcttgtctttattgcttgaagcttggatattgaatcttaatttatgatccacatttaaga |
87 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22083199 |
tcatcaaacttcattatcttgtctttattgcttgaagcttggatattgaatc----tttatgatccacatttaaga |
22083128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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