View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16229_low_2 (Length: 630)
Name: NF16229_low_2
Description: NF16229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16229_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 14 - 614
Target Start/End: Original strand, 36821893 - 36822493
Alignment:
| Q |
14 |
cacagacctgaaagttagatacgatgccaacattgatatgtagacacgagtaataatttcagaaaagtggtcctatgtaattacacgtgtctctattggt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36821893 |
cacagacctgaaagttagatacgatgccaacattgatatgtagacacgagtaataatttcagaaaagtggtcctatgtaattacacgtgtctctattggt |
36821992 |
T |
|
| Q |
114 |
tgtcgaacactgacatgtgtcggttactcataaacaccttcaattagaaatgttggtgttacatagatcagatgtgattttgggaatagtagtaatttac |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36821993 |
tgtcgaacactgacatgtgtcggttactcataaacaccttcaattagaaatgttggtgttacatagatcagatgtgattttaggaatagtagtaatttac |
36822092 |
T |
|
| Q |
214 |
atacaattttattttgaactgaaaaatttacattcatttttgcattaaagttgcttttagaaaaataatcatcaaaacttcaatcagcgttgctgagtct |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36822093 |
atacaattttattttgaactgaaaaatttacattcatttttgcattaaagttgcttttagaaaaataatcatcaaaacttcaatcagtgttgctgagtct |
36822192 |
T |
|
| Q |
314 |
gaaagttcaagttacttaaaaaaggaatagaaattggaagaatgtgatgtttcgagatatttgtagaagaaaagtagttgaaagatcgaagcactataaa |
413 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36822193 |
gaaagtccaagttacttaaaaaaggaatagaaattggaagaatgtgatgtttcgagatatttgtagaagaaaagtagttgaaagatcgaagcactataaa |
36822292 |
T |
|
| Q |
414 |
taaaccgagacagagaatatctttccccctgcagannnnnnnnagcatggaattcaatactaacggaataccaaatacactcctcaacagactagagtag |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36822293 |
taaaccgagacagagaatatctttccccctgcagattctttttagcatggaattcaatactaacggaataccaaatacactcctcaacagactagagtag |
36822392 |
T |
|
| Q |
514 |
ctgaaagaagagtgaaatgattatggatatggtcagatggctaaaggtttaaaaactgcctaagggattttaggctgaaaaagttgctagctagtagtta |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36822393 |
ctgaaagaagagtgaaatgattatggatatggtcagatggctaaaggtttaaaaactgcctaagggattttaggctgaaaaagttgctagctagtagtta |
36822492 |
T |
|
| Q |
614 |
c |
614 |
Q |
| |
|
| |
|
|
| T |
36822493 |
c |
36822493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University