View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16229_low_5 (Length: 315)
Name: NF16229_low_5
Description: NF16229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16229_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 43603496 - 43603206
Alignment:
| Q |
18 |
gtaaaagttagttacacttacactatagcttagttgatgaaaattaatgttgattttccaaaatttacctgagcagaacagcaaagaagaatgtacaagc |
117 |
Q |
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| T |
43603496 |
gtaaaagttagttacacttacactatagcttagttgatgaaaattaatgttgattttccaaaatttacctgagcagaacagcaaagaagaatgtacaagc |
43603397 |
T |
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| Q |
118 |
aggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaagggcaataccatgcacattcagagctaaagtaattctgaaaagcaaccaa |
217 |
Q |
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| T |
43603396 |
aggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaagggcaataccatgcacattcagagctaaagtaattctgaaaagcaaccaa |
43603297 |
T |
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| Q |
218 |
gaaggattacagaaaaaattagtcctaagattc--tgtcaaaatagcatttgtttagaaatcacatagagattaaagaataatgatgatgt |
306 |
Q |
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| T |
43603296 |
gaaggattacagaaaaaattagtcctaagattctttgtcaaaatagcatttgtttagaaatcacatagagattaaagaataatgataatgt |
43603206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 53 - 224
Target Start/End: Complemental strand, 43616414 - 43616244
Alignment:
| Q |
53 |
gatgaaaattaatgttgattttccaaaatttacctgagcagaacagcaaagaagaatgtacaagcaggaaggcaattaacaatagcagcagccaacgaag |
152 |
Q |
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| T |
43616414 |
gatgaaaattaatgtgg-ttttccaaaatttacctgagcataacagcaaagaagaatgttgaagccggaagacagttaacaattgcagcagccaacatag |
43616316 |
T |
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| Q |
153 |
cagaagtgtaaacaagggcaataccatgcacattcagagctaaagtaattctgaaaagcaaccaagaaggat |
224 |
Q |
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| T |
43616315 |
cagacgtgtaagcaagagcaataccattcacattcaaagttaaagtaattctgaaaaacaacaaagtaggat |
43616244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 71 - 251
Target Start/End: Complemental strand, 43609852 - 43609671
Alignment:
| Q |
71 |
ttttccaaaatttacctgagcagaacagcaaagaagaatgtacaagcaggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaaggg |
170 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||| ||| || | ||||||||| ||| ||| | |
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| T |
43609852 |
ttttcaaaaatttacctgagcagaacagcaaagaagaatgtcgaagccggaagacaattaacaattgcaccagacagcatagcagaagtataagaaagag |
43609753 |
T |
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| Q |
171 |
caataccatgcacattcagagctaaagtaattctg-aaaagcaaccaagaaggattacagaaaaaattagtcctaagattct |
251 |
Q |
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| T |
43609752 |
caacaccatgcacattcagagttaaagtaagtctgaaaaagcaaccaagtaggattatagacctaattagtcctaagattct |
43609671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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