View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1622_high_10 (Length: 294)
Name: NF1622_high_10
Description: NF1622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1622_high_10 |
 | |
|
| [»] scaffold0554 (1 HSPs) |
| | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
| [»] scaffold1750 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 23032722 - 23032982
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23032722 |
accaaagggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatc---------------tctctggttcagtccagtagtttgga |
23032806 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctcttggtagcaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23032807 |
tctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctcttggtagcaaaa |
23032906 |
T |
|
| Q |
201 |
gaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattgtgatcggggatgtaattttc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23032907 |
gaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattgagatcggggatgtaattttc |
23032982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 23036178 - 23036430
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23036178 |
accaaaaggaatgtactcaaagttactccctttgtagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtaatttgga |
23036277 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctcttggtagcaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||| | | | |||||||| ||||| ||||||||||||||||||||| ||||||||||| | || |||||||||||||||| |
|
|
| T |
23036278 |
tctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataaccatttatcacacatgcttgaacacactctcttggtagcaaaa |
23036377 |
T |
|
| Q |
201 |
gaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataa |
253 |
Q |
| |
|
||||| || |||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23036378 |
gaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataa |
23036430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 23039049 - 23039304
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||||| | ||||||||| |||||||||||||| || ||||||||||| |||||| |
|
|
| T |
23039049 |
accaaaaggaatgtactcataattacttcctttatagtcaatggcgctgtcaaggaatctctctggataaaatctctccggctcagtccagtaatttgga |
23039148 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctcttggtagcaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
23039149 |
tctcttgcaattgcccaagcattgactatcaccttactcttaataggtatgtgataaccatttatctcacatgtttgacgacattctcttggcagcaaaa |
23039248 |
T |
|
| Q |
201 |
gaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattg |
256 |
Q |
| |
|
||||| || |||||| ||||| |||||||||||||| ||||| |||||||||||| |
|
|
| T |
23039249 |
gaggtgttggagggtgtaacctcagggtttctttgacaactgacttcaaataattg |
23039304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 23145928 - 23146183
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23145928 |
accaaaaggaatgtactcaaagttactccctttatagtcaatatcgctgtcgatgaatctctctggataaaacctctctggttcagtccagtagtttgga |
23146027 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctcttggtagcaaaa |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||| | ||||| |||||||||||||||||||| |||||| |||||| |||||||| |||| ||||| |
|
|
| T |
23146028 |
tctcttgcaactgcccaagcattgactaacaccttagtcttaatcggtatgtgataaccatttatatcacattcttgactacattctctcggtaacaaaa |
23146127 |
T |
|
| Q |
201 |
gaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattg |
256 |
Q |
| |
|
||||| ||| |||||| | ||| | |||||||||||| ||| |||||||||||||| |
|
|
| T |
23146128 |
gaggtgctggagggtgtagccttaaggtttctttgacaactaatttcaaataattg |
23146183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 23017070 - 23017322
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
||||||||||||||| || || ||||| ||||||||||||||| || |||| ||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
23017070 |
accaaaaggaatgtattcgaagttactccctttatagtcaataccgttgtcaatgaatctctctggataaaacttctctggttcagtccagtagtttgga |
23017169 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctcttggtagcaaaa |
200 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||| | |||| ||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
23017170 |
tctcttgcgattgcccaagcattaattatcaccttagtcttaactggtatgtgataaccatgtatctcacatgctttaccacattctcttggtagcaaaa |
23017269 |
T |
|
| Q |
201 |
gaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataa |
253 |
Q |
| |
|
||||||||| ||| || || ||||||||||||||||| |||||||||| |||| |
|
|
| T |
23017270 |
gaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataa |
23017322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 23140054 - 23140307
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||| | | | ||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23140054 |
accaaaaggaatgtactcaaaatcactccctttatagtcaatagtgtttcccatgaatctctctggataaaatttctctggttcagtccagtagtttgga |
23140153 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctcttggtagcaaaa |
200 |
Q |
| |
|
||||| || |||||||| |||||||| | ||||||| | |||| ||||||||||||||||| |||||||||||||||||| || |||||||||||||||| |
|
|
| T |
23140154 |
tctctcgcgattgcccatgcattgacgaccaccttagtcttaaatggtatgtgataaccatgtatctcacatgcttgaccacactctcttggtagcaaaa |
23140253 |
T |
|
| Q |
201 |
gaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataat |
254 |
Q |
| |
|
|||| || | || ||| ||||| | |||||||||||||| |||||||||||||| |
|
|
| T |
23140254 |
gaggcaccggagtgtgtaacctcaaggtttctttgacgattgatttcaaataat |
23140307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 23148766 - 23149021
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||||||||||| |||| || ||||||||||| |||||||| ||||||||||||||||||||||||| | |
|
|
| T |
23148766 |
accaaaaggaatgtactcgaagttactccctttatagtcaatatcgctttcaatgaatctctctggataaaacctctctggttcagtccagtagtttgaa |
23148865 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctcttggtagcaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| | ||||| || ||||||||||||||||| ||||| ||||||| |||||||| |||| ||||| |
|
|
| T |
23148866 |
tctcttgcaattgcccaagcattgattatcactttagtcttaatcggaatgtgataaccatttatatcacacgcttgactacattctctcggtaacaaaa |
23148965 |
T |
|
| Q |
201 |
gaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattg |
256 |
Q |
| |
|
||||| | | |||||| | ||| | |||||||||||| ||| |||||||||||||| |
|
|
| T |
23148966 |
gaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattg |
23149021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 23024280 - 23024534
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||||||||||||| | || |||||||||||||| |||||||| ||||||||||| |||||||| |||||| |
|
|
| T |
23024280 |
accaaaaggaatatactcaaagttactccctttatagtcaatatcactatcgatgaatctctctggataaaacctctctggttcggtccagtaatttgga |
23024379 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctcttggtagcaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||| |||| |||| |||||| | ||||| ||||| |||| | |||||||| |||| |||| |
|
|
| T |
23024380 |
tctcttgcaattgcccaagcattgactatcaccttagtcttagttggaatgtcataaccgtctatcttacatgattgagcacattctctcggtattaaaa |
23024479 |
T |
|
| Q |
201 |
gaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataatt |
255 |
Q |
| |
|
| ||| | | |||||| ||||| |||||||||||||| | ||||||||||||||| |
|
|
| T |
23024480 |
gtggtgccggagggtgtaacctcagggtttctttgacaattgatttcaaataatt |
23024534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 22946412 - 22946588
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||| | |||| || || || || ||||| || |||||||| | ||||| |||||||| || |||||| |
|
|
| T |
22946412 |
accaaatggaatgtactcaaaatttgttcctttgaaatcaacagaactatcaataaatctttcaggataaaacttatctggatcagtccaatattttgga |
22946511 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttg |
177 |
Q |
| |
|
|| ||| |||||||||||||||||| ||||||| |||| || ||||||||||||||||||| |||||||||||||| |
|
|
| T |
22946512 |
tcccttccaattgcccaagcattgattatcaccctactattgattggtatgtgataaccatcaatctcacatgcttg |
22946588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 22971959 - 22972135
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||| | |||| || || || || ||||| || |||||||| | ||||| |||||||| || |||||| |
|
|
| T |
22971959 |
accaaatggaatgtactcaaaatttgttcctttgaaatcaagagaactatcaataaatctttcaggataaaacttatctggatcagtccaatattttgga |
22972058 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttg |
177 |
Q |
| |
|
|| ||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| |||||||| ||||| |
|
|
| T |
22972059 |
tcccttccaattgcccaagcattgattatcaccctacttttgattggtatgtgataaccatcaatctcacaagcttg |
22972135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 22831843 - 22832042
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
||||||||||||| ||||||||||| | || |||||||| | | || || |||||||| || ||||||||||| ||||| || ||| | |||||| |
|
|
| T |
22831843 |
accaaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaatctttctgggtcgtcccaatgatttgga |
22831942 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctcttggtagcaaaa |
200 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||| || ||||||| ||||| | ||| ||||||||||||||||||| || ||||||||||| ||||||| |
|
|
| T |
22831943 |
tctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctcttggaagcaaaa |
22832042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 200
Target Start/End: Complemental strand, 22941502 - 22941367
Alignment:
| Q |
65 |
ggataaaatctctctggttcagtccagtagtttggatctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccattta |
164 |
Q |
| |
|
||||||||||||||||| ||| ||| | |||||||||||| |||| ||||||||||| |||||||| || ||||||| ||||| | ||| ||||||| |
|
|
| T |
22941502 |
ggataaaatctctctgggtcatcccaatgatttggatctcttccaatggcccaagcattcactatcactttgcttttaaaaggtatatcatacccattta |
22941403 |
T |
|
| Q |
165 |
tctcacatgcttgaccgcattctcttggtagcaaaa |
200 |
Q |
| |
|
| ||||||||||| || ||||||||||| ||||||| |
|
|
| T |
22941402 |
tttcacatgcttgtccacattctcttggaagcaaaa |
22941367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 177
Target Start/End: Complemental strand, 22916816 - 22916687
Alignment:
| Q |
48 |
tgtcgatgaatctctcgggataaaatctctctggttcagtccagtagtttggatctcttgcaattgcccaagcattgactatcaccttacttttaattgg |
147 |
Q |
| |
|
|||||||||| || || ||||||||||| ||||| ||| ||| | |||||||||||| |||| ||||||||||| |||||||| || ||||||| ||| |
|
|
| T |
22916816 |
tgtcgatgaacctttcaggataaaatctttctggatcatcccaattatttggatctcttccaatggcccaagcattcactatcactttgcttttaaatgg |
22916717 |
T |
|
| Q |
148 |
tatgtgataaccatttatctcacatgcttg |
177 |
Q |
| |
|
||| ||| |||||||| ||||||||||| |
|
|
| T |
22916716 |
tataccatacccatttatttcacatgcttg |
22916687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 22932271 - 22932400
Alignment:
| Q |
48 |
tgtcgatgaatctctcgggataaaatctctctggttcagtccagtagtttggatctcttgcaattgcccaagcattgactatcaccttacttttaattgg |
147 |
Q |
| |
|
|||||||||| || || ||||||||||| ||||| ||| ||| | |||||||||||| |||| |||||| |||| ||||| || || ||||||| ||| |
|
|
| T |
22932271 |
tgtcgatgaacctttcaggataaaatctttctggatcatcccaattatttggatctcttccaatggcccaaacattcactattactttgcttttaaatgg |
22932370 |
T |
|
| Q |
148 |
tatgtgataaccatttatctcacatgcttg |
177 |
Q |
| |
|
|| ||| |||||||| ||||||||||| |
|
|
| T |
22932371 |
gataccatacccatttatttcacatgcttg |
22932400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 6746 - 6491
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| |||||||| |||||||||||||||||| |||||||| |
|
|
| T |
6746 |
accaaaaggaatgtactcaaaattaccccctttatagtcaatagtgctgtcagtgaatctctctggataaaacctctctggttcagtccagaagtttgga |
6647 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctcttggtagcaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
6646 |
tctcttgcaattgcccaagcattgattatcaccttactcctaaacggtatgttataaccatttatctcacatgctttaccacattctcttggtagcaaaa |
6547 |
T |
|
| Q |
201 |
gaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattg |
256 |
Q |
| |
|
||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6546 |
gaggtgctggagggtgtaacctaagggtttctttgacgactgatttcaaataattg |
6491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 21779821 - 21780076
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||| |||||||| |||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
21779821 |
accaaatggaatgtactcaaaattactccctttaaagtcaatatcgctatcgatgaatctctctggataaaacatctctggttcagtccagtagtttgga |
21779920 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctcttggtagcaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| | ||||| || ||||| ||||||||||| ||||||||||||| |||||||| |||| ||||| |
|
|
| T |
21779921 |
tctcttgcaattgcccaagcattgattatcaccttagtcttaatcggaatgtggtaaccatttatatcacatgcttgactacattctctcggtaacaaaa |
21780020 |
T |
|
| Q |
201 |
gaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattg |
256 |
Q |
| |
|
||||| ||| |||||| | ||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
21780021 |
gaggtgctggagggtgtagccttaaggtttctttgacaactgatttcaaataattg |
21780076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 15885954 - 15885702
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||| ||| | ||||||||||| |||||||| ||||||||||||||||| || |||||| |
|
|
| T |
15885954 |
accaaaaggaatgtactcaaaattattccctttatagtcaatagagctaccaatgaatctctctggataaaacctctctggttcagtccaatactttgga |
15885855 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctcttggtagcaaaa |
200 |
Q |
| |
|
|||||| |||| ||||| ||||||||||||||||| ||||| ||||||| |||||||||| |||||||||||||| | ||||||||||| || |||| |
|
|
| T |
15885854 |
tctcttccaatcgcccatgcattgactatcaccttgcttttggttggtatatgataaccatcaatctcacatgcttgttcacattctcttggaagtaaaa |
15885755 |
T |
|
| Q |
201 |
gaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataa |
253 |
Q |
| |
|
|||| ||| |||||| ||||| | ||| ||||| || ||||| ||||||||| |
|
|
| T |
15885754 |
gaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataa |
15885702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 12609913 - 12610165
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
|||||| |||||||||||||||||| | ||||| |||||||||| ||| ||||||||||||| |||||||| ||||||||||||||||||| |||||| |
|
|
| T |
12609913 |
accaaagggaatgtactcaaaattattccctttgtagtcaatagagctaccgatgaatctctccggataaaacttctctggttcagtccagtactttgga |
12610012 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctcttggtagcaaaa |
200 |
Q |
| |
|
|||||| |||| ||||| ||||||||||||||||| ||||| |||||||| |||| |||| |||||||||||||| || ||||||||||| || |||| |
|
|
| T |
12610013 |
tctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatacgatacccatcaatctcacatgcttgtccacattctcttggaagtaaaa |
12610112 |
T |
|
| Q |
201 |
gaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataa |
253 |
Q |
| |
|
|||| ||| ||| || ||||| | ||| ||||| || ||||| || |||||| |
|
|
| T |
12610113 |
gaggacctggaggatgtaaccttaaggtctctttcacaactgactttaaataa |
12610165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 12637009 - 12637197
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||| ||| | ||||||||||| |||| ||| |||||||||||||||||||| |||||| |
|
|
| T |
12637009 |
accaaaaggaatgtactcaaaattatttcctttgtagtcaatagagctaccaatgaatctctctggatgaaacctctctggttcagtccagtactttgga |
12637108 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctct |
189 |
Q |
| |
|
||||| |||||| ||| ||||| ||||||||||||||||| |||||| ||||| || | || ||||||||||| || |||||||| |
|
|
| T |
12637109 |
tctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgatacccttcaatttcacatgcttgtccacattctct |
12637197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 62161 - 62363
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
|||||||||||||||||| |||||| | || || |||||||||| || | ||||||||||| |||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
62161 |
accaaaaggaatgtactcgaaattattcccgttgtagtcaatagaactaccaatgaatctctctggataaaacctctctggttccgtccagtaccttgga |
62260 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctcttggtagcaaaa |
200 |
Q |
| |
|
|||||| | |||||||| ||||| ||||||| ||| |||| |||||||| ||||| |||| ||||||||||||| | ||||||||||| || |||| |
|
|
| T |
62261 |
tctcttccgattgcccatgcattaactatcagctttgttttcattggtatatgatacccatcaatctcacatgcttctctacattctcttggaagtaaaa |
62360 |
T |
|
| Q |
201 |
gag |
203 |
Q |
| |
|
||| |
|
|
| T |
62361 |
gag |
62363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 5594222 - 5594023
Alignment:
| Q |
1 |
accaaaaggaatgtactcaaaattacttcctttatagtcaatagcgctgtcgatgaatctctcgggataaaatctctctggttcagtccagtagtttgga |
100 |
Q |
| |
|
||||||||||||| ||||||||||| | || |||||||| | | || || |||||||| || ||||||||||| ||||| || ||| | |||||| |
|
|
| T |
5594222 |
accaaaaggaatgaactcaaaattattacccttatagtccacacaactatcaatgaatctttcaggataaaatctttctgggtcgtcccaatgatttgga |
5594123 |
T |
|
| Q |
101 |
tctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgtgataaccatttatctcacatgcttgaccgcattctcttggtagcaaaa |
200 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||| || ||||||| ||||| | ||| ||||||||||||||||||| || ||||||||||| ||||||| |
|
|
| T |
5594122 |
tctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatatcatacccatttatctcacatgcttttccacattctcttggaagcaaaa |
5594023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1750 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1750
Description:
Target: scaffold1750; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 1209 - 1173
Alignment:
| Q |
98 |
ggatctcttgcaattgcccaagcattgactatcacct |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1209 |
ggatctcttgcaattgcccaagcattgactattacct |
1173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 35650223 - 35650187
Alignment:
| Q |
98 |
ggatctcttgcaattgcccaagcattgactatcacct |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35650223 |
ggatctcttgcaattgcccaagcattgactattacct |
35650187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 134
Target Start/End: Complemental strand, 35678300 - 35678267
Alignment:
| Q |
101 |
tctcttgcaattgcccaagcattgactatcacct |
134 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
35678300 |
tctcttgcaattgcccaagcattgactattacct |
35678267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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