View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1622_high_12 (Length: 286)
Name: NF1622_high_12
Description: NF1622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1622_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 23032328 - 23032605
Alignment:
| Q |
1 |
acgcgcaatgttaactccttaagcctgtaaaaaggaaacataaactcgcttttgatttatagaaacttacaagccatactatgttgatttccatggccaa |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23032328 |
acgcgcaatgttaactcctcaagcctgtaaaaaggaaacataaactcgctttcgatttatagaaacttacaagccatactatgttgatttccatggtcaa |
23032427 |
T |
|
| Q |
101 |
cagggtttaggtgtttgaatccctgaaataaaagatcatgcgaagctattcacaaccaaaggtttcattttcttcgtgcacagctcatgtgacattcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23032428 |
cagggtttaggtgtttgaatccctgaaataaaagatcatgggaagctatttactaccaaaggtttcattttcttcgtgcgaagctcatgtgacattcaaa |
23032527 |
T |
|
| Q |
201 |
ggttgatgaacaagtggaatcagtaaaagatcatctttgcttctcattgcgattccaaattcctcagtcatgtctagt |
278 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23032528 |
ggttgatgaataagtggaatcagtaaaagatcatcttttcttctcattgcgattccaaattcctcagtcatgtctagt |
23032605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 274
Target Start/End: Original strand, 23016835 - 23016949
Alignment:
| Q |
160 |
aggtttcattttcttcgtgcacagctcatgtgacattcaaaggttgatgaacaagtggaatcagtaaaagatcatctttgcttctcattgcgattccaaa |
259 |
Q |
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|||||||||||||||| | ||||||| ||||||||||||| |||| ||||| || | |||||||| |||||||| || ||||||| || |||||| |
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| T |
23016835 |
aggtttcattttcttcttctgaagctcatctgacattcaaaggatgataaacaaaaggcaatagtaaaaggtcatcttttctcctcattgtgactccaaa |
23016934 |
T |
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| Q |
260 |
ttcctcagtcatgtc |
274 |
Q |
| |
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|| |||||||||||| |
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| T |
23016935 |
ttgctcagtcatgtc |
23016949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 23139883 - 23139930
Alignment:
| Q |
224 |
taaaagatcatctttgcttctcattgcgattccaaattcctcagtcat |
271 |
Q |
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||||||||||||||| ||||||| ||||| |||||||||||| ||||| |
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| T |
23139883 |
taaaagatcatcttttcttctcactgcgactccaaattcctcggtcat |
23139930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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