View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1622_high_15 (Length: 247)
Name: NF1622_high_15
Description: NF1622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1622_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 44553337 - 44553567
Alignment:
| Q |
1 |
ttcgggtctctttttgttactttctttcactttcttgaagtacttgtttatattctcccatttttctttgcacctttttgcattcctattgtaaccgagg |
100 |
Q |
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| T |
44553337 |
ttcgggtctctttttgttactctctttcactttcttgaagtacttgtttatattctcccatttttctttgcacctttttgcattcctattgtaaccgagg |
44553436 |
T |
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| Q |
101 |
ttcttcattgctaaagatatttcctcccatagaggaccttttggtccattctcttggtacttattgtccatgctcgtcctcagatttattagtgcttgaa |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44553437 |
ttcttcattgctaaagatatctcctcccatagaggaccttttggtccattctcttggtacttattgtccatgctcgtcctcagatttataagtgcttgaa |
44553536 |
T |
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| Q |
201 |
cttcaactttcggccaccttgacgaactcat |
231 |
Q |
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| T |
44553537 |
cttcaactttcggccaccttgacgaactcat |
44553567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 44533733 - 44533654
Alignment:
| Q |
14 |
ttgttactttctttcactttcttgaagtacttgtttatattctcccatttttctttgcacctttttgcattcctattgta |
93 |
Q |
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| T |
44533733 |
ttgttactttccttcattttcttgtagtatttgttgatattctcccatttttctttgcacctttttgcattcctattgta |
44533654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 12683369 - 12683215
Alignment:
| Q |
8 |
ctctttttgttactttctttcactttcttgaagtacttgtttatattctcccatttttctttgcacctttttgcattcctattgtaaccgaggttcttca |
107 |
Q |
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| T |
12683369 |
ctcttcttgttgctttccttcactttcttgaaatacttgttaatgttttcccatttctctttgcacctctttgcattcctattgtaccccattttcttca |
12683270 |
T |
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| Q |
108 |
ttgctaaagatatttcctcccatagaggaccttttggtccattctcttggtactt |
162 |
Q |
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| || || |||||||||| || ||||| |||||||||||||||||||| |
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| T |
12683269 |
tcaaccctgaaatctcctcccataatggccctttaggtccattctcttggtactt |
12683215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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