View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1622_high_3 (Length: 634)
Name: NF1622_high_3
Description: NF1622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1622_high_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 13 - 616
Target Start/End: Original strand, 56234196 - 56234800
Alignment:
| Q |
13 |
aatattatcaccttccacctacacatgatcttcttcnnnnnnn--cttccatgtttattctttctttcttataaacaaattcctaaaaatgaaacccatg |
110 |
Q |
| |
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||||||||||||| |||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56234196 |
aatattatcacctcccacttacacatgatcttcttctttttttttcttcagtgtttattctttctttcttataaacaaattcctaaaaatgaaacccatg |
56234295 |
T |
|
| Q |
111 |
ttatcaatttaattaagaaatcaaaactctgaattttcttcaccttcatcttcttcattcttggatcccttcagatcggaaccattttctgttgggattc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56234296 |
ttatcaatttaattaagaaatcaaaactctgaattttcttcaccttcgtcttcttcattcttggatcccttcagatcggaaccattttctgttgggattc |
56234395 |
T |
|
| Q |
211 |
cttccg-ttttttcgagattcgttccaatttggatttagttttattgctttggtttttctaggtttgaatctaggtgtctgggtttgagaaatcacgatt |
309 |
Q |
| |
|
|||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56234396 |
cttcagtttttttcgagattcattccaatttggatttagttttattgctttggtttttctaggtttgaatctaggtgtctgggtttgagaaatcacgatt |
56234495 |
T |
|
| Q |
310 |
cttttgatgggtgggtttcggaaaatcatcccaaaaggttgaattgtaaatcatatactgtga---tgtgcgttttggaaataaatgaagttgttgaann |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |
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|
| T |
56234496 |
cttttgatgggtgggtttcggaaaatcatcccaaaaggttgagttgtaaatcatataccgtgatgttgtgcattttggaaataaatgaagttgttgaatt |
56234595 |
T |
|
| Q |
407 |
nnnnngggatttggctgagaatatgaagaaaataaagggtttgggtgtttgaagtggggaagatgcaacttctggagtagccccgcataatttctcatat |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56234596 |
tttttgggatttggctgagaatatgaagaaaataaagggtttgggtgtttgaagtggagaagatgcaacttctggagtagccccgcataatttctcatat |
56234695 |
T |
|
| Q |
507 |
aagttgttggccgttggcattcactctataaaataaaactaaaggataaattgagttagatgatggtggtggtgtttattctagattcaagggtttttga |
606 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
56234696 |
aagttgttggccgttggcattcactct-----acaaaactaaaggataaattgagttagatgatggtggcggtgtttattctagattcaagggtttttga |
56234790 |
T |
|
| Q |
607 |
gagtagaaga |
616 |
Q |
| |
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|||||||||| |
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|
| T |
56234791 |
gagtagaaga |
56234800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 558 - 593
Target Start/End: Complemental strand, 55953190 - 55953155
Alignment:
| Q |
558 |
tgagttagatgatggtggtggtgtttattctagatt |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
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|
| T |
55953190 |
tgagttagatgatggtggtggtgtttattccagatt |
55953155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 560 - 598
Target Start/End: Complemental strand, 33376600 - 33376562
Alignment:
| Q |
560 |
agttagatgatggtggtggtgtttattctagattcaagg |
598 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
33376600 |
agttagatgatggtggtggtgtttattccagatttaagg |
33376562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 587
Target Start/End: Original strand, 44128049 - 44128078
Alignment:
| Q |
558 |
tgagttagatgatggtggtggtgtttattc |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
44128049 |
tgagttagatgatggtggtggtgtttattc |
44128078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 62 - 602
Target Start/End: Original strand, 13749727 - 13750262
Alignment:
| Q |
62 |
tgtttattctttctttcttataaacaaattcctaaaaatgaaacccatgttatcaatttaattaagaaatcaaaactctgaattttcttcaccttcatct |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||| ||| |
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|
| T |
13749727 |
tgtttattctttctttcttataaacaaattcctaaaaatgaaacccatattttcaatttaattaagaaatctaaactctgaattttcttcaccttcgtct |
13749826 |
T |
|
| Q |
162 |
tcttcattcttggatcccttcagatcggaaccattttctgttgggattccttccg-ttttttcgagattcgttccaatttggatttagttttattgcttt |
260 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| ||||||||||||||||||||| |||||| | |||| |||||||||||||||||||||| |||||| |
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|
| T |
13749827 |
tcttcattcttggatcccttcagatctaatccaatttctgttgggattccttccgttttttttcaaattcattccaatttggatttagttttaatgcttt |
13749926 |
T |
|
| Q |
261 |
ggtttttctaggtttgaatctaggtgtctgggtttgagaaatcacgattcttttgatgggtgggtttcggaaaatcatcccaaaaggttgaattgtaaat |
360 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| ||||||| |
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|
| T |
13749927 |
ggttattctaggtttgaatctaggtgtctgggtttgagaaatcacgattcttttga----tgtgtttctgaaaatcatcccaaaaggttgagctgtaaat |
13750022 |
T |
|
| Q |
361 |
catatactgtga---tgtgcgttttggaaataaatgaagttgttgaannnnnnngggatttggctgagaatatgaagaaaataaagggtttgggtgtttg |
457 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| || |||| |
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|
| T |
13750023 |
catataccgtgatgctgtgcgttttggaaataaatgaagttgttgaatttttttgggatttggctgggaatatgaagaaactaaagggttaggtgttttg |
13750122 |
T |
|
| Q |
458 |
aagtggggaagatgcaacttctggagtagccccgcataatttctcatataagttgttggccgttggcattcactctataaaataaaactaaaggataaat |
557 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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|
| T |
13750123 |
aactggagaagatgcaacttctggagtagccccgcataatttctcatataagttgttggccgttggcattcactctacaaaat-----taaaggataaat |
13750217 |
T |
|
| Q |
558 |
tgagttagatgatggtggtggtgtttattctagattcaagggttt |
602 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
13750218 |
tgagttagatgatgatggtggtgtttattctagattcaagggttt |
13750262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 43006761 - 43006721
Alignment:
| Q |
558 |
tgagttagatgatggtggtggtgtttattctagattcaagg |
598 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||| |||| |
|
|
| T |
43006761 |
tgagttacatgatggtggtggtgtttattccagatttaagg |
43006721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 4e-52; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 72 - 321
Target Start/End: Complemental strand, 34015139 - 34014889
Alignment:
| Q |
72 |
ttctttcttataaacaaattcctaaaaatgaaacccatgttatcaatttaattaagaaatcaaaactctgaattttcttcaccttcatcttcttcattct |
171 |
Q |
| |
|
||||||||||||||||||||| | ||||| |||||||| || ||||||||||||||||||| ||||||| | |||| ||||||||| |||||||||||| |
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|
| T |
34015139 |
ttctttcttataaacaaattcttgaaaatcaaacccatattttcaatttaattaagaaatctaaactctaagttttgttcaccttcgtcttcttcattcc |
34015040 |
T |
|
| Q |
172 |
tggatcccttcagatcggaaccattttctgttgggattccttccgttt--tttcgagattcgttccaatttggatttagttttattgctttggtttttct |
269 |
Q |
| |
|
|||||||||||| ||| | ||||||||||||| ||||| || ||| ||| |||||| ||||||||||||||||| ||| || ||||| |||||| |
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|
| T |
34015039 |
tggatcccttcatatcaaatccattttctgttgcgattcattttttttccttttcagattcattccaatttggatttagatttcttattttgg-ttttct |
34014941 |
T |
|
| Q |
270 |
aggtttgaatctaggtgtctgggtttgagaaatcacgattcttttgatgggt |
321 |
Q |
| |
|
||||||||| ||||| || || ||||||||||||||||||||||||||||| |
|
|
| T |
34014940 |
gggtttgaatttaggtatccggttttgagaaatcacgattcttttgatgggt |
34014889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 46693296 - 46693349
Alignment:
| Q |
56 |
cttccatgtttattctttctttcttataaacaaattcctaaaaatgaaacccat |
109 |
Q |
| |
|
|||| ||||| ||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
46693296 |
cttcaatgttaattctttatttcttataaacaaattccttaaaatcaaacccat |
46693349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 593
Target Start/End: Complemental strand, 54353408 - 54353371
Alignment:
| Q |
556 |
attgagttagatgatggtggtggtgtttattctagatt |
593 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
54353408 |
attgagttatatgatggtggtggtgttaattctagatt |
54353371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 21455507 - 21455462
Alignment:
| Q |
557 |
ttgagttagatgatggtggtggtgtttattctagattcaagggttt |
602 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||| |||| |
|
|
| T |
21455507 |
ttgagttagatgatggtggtggtgttaattctagatttaagagttt |
21455462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Complemental strand, 1756626 - 1756582
Alignment:
| Q |
558 |
tgagttagatgatggtggtggtgtttattctagattcaagggttt |
602 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| ||| |||||||| |
|
|
| T |
1756626 |
tgagttagatgatggtggtgatgttgattctaaatttaagggttt |
1756582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 16217815 - 16217775
Alignment:
| Q |
558 |
tgagttagatgatggtggtggtgtttattctagattcaagg |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
16217815 |
tgagttagatgatggtggtggtgtttattccagatttaagg |
16217775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 517
Target Start/End: Complemental strand, 44189752 - 44189703
Alignment:
| Q |
467 |
agatgcaacttctggagtagccccgcataatttctcatataagttgttggc |
517 |
Q |
| |
|
||||||| ||||||||||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
44189752 |
agatgcagcttctggagtagccc-gcagaatttcacatataagttgttggc |
44189703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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