View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1622_high_5 (Length: 477)
Name: NF1622_high_5
Description: NF1622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1622_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 12 - 461
Target Start/End: Original strand, 9197965 - 9198414
Alignment:
| Q |
12 |
atgaaacggaagcctagaccaagttgtgatcaaaagtgtacaagccaaagaaggcctagctcttgttacctcaaaataatcaatagctgatctcatgtaa |
111 |
Q |
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| T |
9197965 |
atgaaacggaagcctagaccaagttgtgatcaaaagtgtacaagccaaagatggcctagctcttgttacctcaaaataatcaatagctgatctcatgtaa |
9198064 |
T |
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| Q |
112 |
ctatcagtaaccatcttgattgcatcttgaataaccttcaccgtatacgaaaagggcttgttcgtaatttcacctgctttacaaacagcatttgttaaaa |
211 |
Q |
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| T |
9198065 |
ctatcagtgaccatcttgattgcatcttgaataaccttcaccgtatacgaaaagggcttgttcgtaatttcacctgctttacacacagcatttgttaaaa |
9198164 |
T |
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| Q |
212 |
taattccattcccaaaatacccttttggaagttttggttcaaatttagcccttccatcaacagcaaaaagaagctttgtttcttgttctggcaacatttt |
311 |
Q |
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| T |
9198165 |
taattccattcccaaaatacccttttggaagtttaggttcaaatttagcccttccatcaacagcaaaaagaagctttgtttcttgttctggcaacatttt |
9198264 |
T |
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| Q |
312 |
cagtgcttttgttcttgctatccaaacaaacgccgaaagcacttcaaatgttgtacaagattcaagaacaccaccttcatcatctaaagcttttttcttc |
411 |
Q |
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| T |
9198265 |
cagtgcttttgttcttgctatccaaacaaacgctgaaagcacttcaaatgttgtgcaagattcaagaacaccaccttcatcttctaaagcttttttcttc |
9198364 |
T |
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| Q |
412 |
agttcttttagtttctcgggatcaaaacagaatgatcgatacaccatttc |
461 |
Q |
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| T |
9198365 |
aattcttttagtttctcgggatcaaaacagaatgatcgatacaccatttc |
9198414 |
T |
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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 45350411 - 45350506
Alignment:
| Q |
30 |
ccaagttgtgatcaaaagtgtacaagccaaagaaggcctagctcttgttacctcaaaataatcaatagctgatctcatgtaactatcagtaaccat |
125 |
Q |
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| T |
45350411 |
ccaagttgtaatcaaaagtgtgcctgttaaagaaggcctagctcttgtaacttcaaaataatcaatagcagatctcatataactatctgtaaccat |
45350506 |
T |
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