View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1622_low_10 (Length: 366)
Name: NF1622_low_10
Description: NF1622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1622_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 45944389 - 45944738
Alignment:
| Q |
1 |
ggtataatgctttgtagtttgttgaatttgaagtagnnnnnnnnnnnnnnaaatgttttaaaaaattagagtcactttatatcatcatcaaattgatttt |
100 |
Q |
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| T |
45944389 |
ggtataatgctttgtagtttgttgaatttgaagtagtttttcttttttttaaatgttttaaaaaattagagtcactttatatcatcatcaaattgatctt |
45944488 |
T |
|
| Q |
101 |
atcagtatagaagttgatttcttcaaccttttaatcaaagaatttgagaatagaaaatgagaggagcaaannnnnnnnnnnnnn-attattaggcagtta |
199 |
Q |
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| T |
45944489 |
atcagtatagaagttgatttcttcaaccttttagtcaaagaatttgagaatagaaaatgagaggaacaatttttttttattttttattataaggtagtta |
45944588 |
T |
|
| Q |
200 |
tgtagcgtctctttgaatctctttggatgttatgagtcattttatgtgatctttattttcttttcttctgtgtgtcaatgcagcaccaatgtacacattt |
299 |
Q |
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| T |
45944589 |
tgtagcgtctctttgaatctcttttgatgttatgagtcattttatgtgatctttatttt-ttttcttctgtg--tcaatgcagcaccaatgtacacattt |
45944685 |
T |
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| Q |
300 |
atcaaagaagccacatttgctcctccaatcttaacatatgattatatagtaat |
352 |
Q |
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| T |
45944686 |
atcaaagaagccacatttgctcctccaatcttaacatatgattatatagtaat |
45944738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 45937928 - 45937983
Alignment:
| Q |
294 |
acatttatcaaagaagccacatttgctcctccaatcttaacatatgattatatagt |
349 |
Q |
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| T |
45937928 |
acatttatcaaagaagcaacatttgctccaccaatcttaacatatgactatatagt |
45937983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 35650518 - 35650449
Alignment:
| Q |
233 |
gagtcattttatgtgatctttattttcttttcttctgtgtgtcaatgcagcaccaatgtacacatttatc |
302 |
Q |
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||||||||||||| ||||| |||||| |||| || | |||||||||||| ||||||| |||||||||||| |
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| T |
35650518 |
gagtcattttatgcgatctatattttttttttttttttgtgtcaatgcaacaccaatatacacatttatc |
35650449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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