View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1622_low_12 (Length: 302)

Name: NF1622_low_12
Description: NF1622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1622_low_12
NF1622_low_12
[»] chr4 (26 HSPs)
chr4 (1-287)||(1537548-1537834)
chr4 (14-281)||(12121251-12121518)
chr4 (7-278)||(1489148-1489419)
chr4 (11-170)||(1504902-1505061)
chr4 (220-281)||(1513407-1513468)
chr4 (212-271)||(1519135-1519193)
chr4 (219-272)||(532236-532289)
chr4 (209-281)||(1552756-1552828)
chr4 (88-192)||(8186959-8187063)
chr4 (229-279)||(659749-659799)
chr4 (221-271)||(8184031-8184081)
chr4 (87-192)||(1524353-1524458)
chr4 (210-271)||(1600467-1600528)
chr4 (214-270)||(570400-570456)
chr4 (75-170)||(558647-558742)
chr4 (219-272)||(55505107-55505160)
chr4 (219-271)||(1548423-1548475)
chr4 (91-163)||(1600575-1600647)
chr4 (219-287)||(53761771-53761839)
chr4 (238-281)||(1508021-1508064)
chr4 (220-271)||(8187091-8187142)
chr4 (49-163)||(8183859-8183973)
chr4 (53-122)||(547110-547179)
chr4 (217-281)||(1524483-1524547)
chr4 (222-270)||(7307909-7307957)
chr4 (221-281)||(12116576-12116636)
[»] chr8 (8 HSPs)
chr8 (10-281)||(18315063-18315334)
chr8 (222-281)||(27922546-27922605)
chr8 (219-270)||(21235607-21235658)
chr8 (68-271)||(32151349-32151549)
chr8 (221-264)||(17636402-17636445)
chr8 (224-271)||(28246299-28246346)
chr8 (221-271)||(34936164-34936214)
chr8 (130-170)||(44736626-44736666)
[»] chr7 (2 HSPs)
chr7 (140-287)||(15092071-15092218)
chr7 (210-287)||(10614625-10614702)
[»] chr6 (16 HSPs)
chr6 (210-288)||(6415997-6416075)
chr6 (210-287)||(6589313-6589390)
chr6 (214-270)||(12102315-12102371)
chr6 (139-269)||(6402910-6403040)
chr6 (210-271)||(6432209-6432270)
chr6 (210-271)||(6410054-6410115)
chr6 (218-270)||(9411404-9411456)
chr6 (220-287)||(7994182-7994249)
chr6 (49-116)||(9411555-9411622)
chr6 (224-271)||(11936279-11936326)
chr6 (224-271)||(11948259-11948306)
chr6 (217-271)||(6394912-6394966)
chr6 (222-271)||(6423265-6423314)
chr6 (139-192)||(7119284-7119337)
chr6 (139-192)||(7131762-7131815)
chr6 (210-270)||(6594596-6594656)
[»] chr5 (4 HSPs)
chr5 (227-281)||(41901542-41901596)
chr5 (222-281)||(41889556-41889615)
chr5 (250-287)||(20478112-20478149)
chr5 (86-163)||(41901404-41901481)
[»] chr3 (4 HSPs)
chr3 (210-287)||(13470722-13470799)
chr3 (214-263)||(51120887-51120936)
chr3 (224-271)||(1657299-1657346)
chr3 (210-271)||(51113771-51113832)
[»] chr1 (3 HSPs)
chr1 (229-281)||(9586677-9586729)
chr1 (45-101)||(9586854-9586910)
chr1 (10-101)||(9581286-9581377)
[»] chr2 (2 HSPs)
chr2 (221-271)||(32785773-32785823)
chr2 (12-161)||(32785567-32785716)
[»] scaffold0807 (1 HSPs)
scaffold0807 (222-281)||(1466-1525)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 1537548 - 1537834
Alignment:
Q  1 ttatttgtcagccctcaattaaagtctctccatttgatttcgagtcaatggttaagagataaaagcttcaaaatgattgcttcagttttccccaatttgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1537548 ttatttgtcagccctcaattaaagtctctccatttgatttcgagtcaatggttaagagataaaagcttcaaaatgattgcttcagttttcccgaatttgc 1537647  T
Q  101 aattgcttaatttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaaggacatgttccgagcttaagcatttgaacttaactggctt 200  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  1537648 aattgtttaatttgagttattgctttccaatatctgaagaaggtatttttcaagttttaaggacatgttccgagcttaggcatttgaacttaaccggctt 1537747  T
Q  201 aagaggttggaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaac 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1537748 aagaggttggaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaac 1537834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 12121251 - 12121518
Alignment:
Q  14 ctcaattaaagtctctccatttgatttcgagtcaatggttaagagataaaagcttcaaaatgattgcttcagttttccccaatttgcaattgcttaattt 113  Q
    ||||||||||||||||||||||||||||||||  |||||||  |||| ||||| |||||| ||||||||| |||||||||||||||||||||||| ||||    
T  12121251 ctcaattaaagtctctccatttgatttcgagtacatggttacaagatgaaagcatcaaaaggattgcttccgttttccccaatttgcaattgcttgattt 12121350  T
Q  114 gagttattgcttttcaatatctgaagaaggtatttttcaagttttaaggacatgttccgagcttaagcatttgaacttaactggcttaagaggttggaag 213  Q
    ||||| ||||| |   |||||||||||||||||||| ||||| |||||||||||||||||| ||| |||||||||||||||  | |    |||  |||||    
T  12121351 gagtttttgctataacatatctgaagaaggtattttccaagtcttaaggacatgttccgagattacgcatttgaacttaaccagttgtttaggaaggaag 12121450  T
Q  214 ctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatga 281  Q
    ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12121451 ctgcgccgaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatga 12121518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 7 - 278
Target Start/End: Original strand, 1489148 - 1489419
Alignment:
Q  7 gtcagccctcaattaaagtctctccatttgatttcgagtcaatggttaagagataaaagcttcaaaatgattgcttcagttttccccaatttgcaattgc 106  Q
    |||| |||||||||||||||||||||||||||||||| |  | |  || ||||| ||||| |  ||||||||||| |  |||||||||||||||||||||    
T  1489148 gtcatccctcaattaaagtctctccatttgatttcgaattcacgaatacgagatgaaagcatagaaatgattgctgcccttttccccaatttgcaattgc 1489247  T
Q  107 ttaatttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaaggacatgttccgagcttaagcatttgaacttaactggcttaagagg 206  Q
    ||||||||| |||||||| |   |||||||||||||||||||| || ||||||| ||||||||| ||  ||| ||||||||||||||   | |    |||    
T  1489248 ttaatttgacttattgctataacatatctgaagaaggtattttccatgttttaaagacatgttctgatattaggcatttgaacttaagaagatctttagg 1489347  T
Q  207 ttggaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaa 278  Q
       |||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1489348 aaagaagctgtgcggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaa 1489419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 170
Target Start/End: Original strand, 1504902 - 1505061
Alignment:
Q  11 gccctcaattaaagtctctccatttgatttcgagtcaatggttaagagataaaagcttcaaaatgattgcttcagttttccccaatttgcaattgcttaa 110  Q
    ||||||||||||||||||||||||||||||  | || ||| ||| ||||| ||||| || ||| ||||||||| ||||||||||||||||||||| ||||    
T  1504902 gccctcaattaaagtctctccatttgatttttaatccatgtttacgagatgaaagcatccaaacgattgcttccgttttccccaatttgcaattggttaa 1505001  T
Q  111 tttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaaggacatgttc 170  Q
    ||| |||||||||  |   |||||||||||||||||||| || |||||||||||||||||    
T  1505002 ttttagttattgccataacatatctgaagaaggtattttccatgttttaaggacatgttc 1505061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 1513407 - 1513468
Alignment:
Q  220 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatga 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  1513407 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatga 1513468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 1519135 - 1519193
Alignment:
Q  212 agctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 271  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  1519135 agctgcatg-aatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaa 1519193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 532289 - 532236
Alignment:
Q  219 tggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaa 272  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  532289 tggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaa 532236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 281
Target Start/End: Original strand, 1552756 - 1552828
Alignment:
Q  209 ggaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatga 281  Q
    ||||||| | |||| ||||||||||| |||||||||| ||||||||||| |||||| |||||||| |||||||    
T  1552756 ggaagctacttggactgaactttgaaattcccaaactggaagtgttgaatttgtcacatacaaatattaatga 1552828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 8186959 - 8187063
Alignment:
Q  88 ttccccaatttgcaattgcttaatttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaaggacatgttccgagcttaagcatttga 187  Q
    |||||||||||||| |||||| |||||||| |||||| |   ||||||||||||||||||| ||||||||| | || |||||  ||| ||| | ||||||    
T  8186959 ttccccaatttgcagttgcttgatttgagtcattgctatgacatatctgaagaaggtatttgtcaagttttgaagagatgttgtgagattagggatttga 8187058  T
Q  188 actta 192  Q
    |||||    
T  8187059 actta 8187063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 659799 - 659749
Alignment:
Q  229 tttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaat 279  Q
    |||||||||||||||||||| ||||||||||||||| |||||| |||||||    
T  659799 tttgaagttcccaaactagaggtgttgaacttgtcacatacaagtgttaat 659749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 8184031 - 8184081
Alignment:
Q  221 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 271  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| ||||||    
T  8184031 gaatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaa 8184081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 192
Target Start/End: Original strand, 1524353 - 1524458
Alignment:
Q  87 tttccccaatttgcaattgcttaatttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaaggacatgttccgagcttaagcatttg 186  Q
    |||||||||||||||  ||||| |||| ||||||||||  |   ||||||||||||||||| |||| |||||||||| |||||   | |||| |||||||    
T  1524353 tttccccaatttgcagctgcttgatttaagttattgctcatacgtatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttg 1524452  T
Q  187 aactta 192  Q
    ||||||    
T  1524453 aactta 1524458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 1600528 - 1600467
Alignment:
Q  210 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 271  Q
    ||||||||  |||||||||||||||||||  ||||| || ||||||||||||||||||||||    
T  1600528 gaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttgtcatatacaa 1600467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 570456 - 570400
Alignment:
Q  214 ctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 270  Q
    |||| |||| ||||||||||||||| |||||| || |||||||||||||||||||||    
T  570456 ctgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtcatataca 570400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 170
Target Start/End: Complemental strand, 558742 - 558647
Alignment:
Q  75 gattgcttcagttttccccaatttgcaattgcttaatttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaaggacatgttc 170  Q
    ||||||||| |||||||| |||||| |||||||| ||||||  |||||   |  |||||| ||| ||||||||| ||| |||||||||||||||||    
T  558742 gattgcttccgttttcccgaatttgaaattgcttgatttgatctattgtcataaaatatcagaaaaaggtatttgtcatgttttaaggacatgttc 558647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 55505107 - 55505160
Alignment:
Q  219 tggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaa 272  Q
    |||||||||||||  ||| ||| ||||||| |||||||||||||||||||||||    
T  55505107 tggaatgaactttagagtcccccaactagaggtgttgaacttgtcatatacaaa 55505160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 1548423 - 1548475
Alignment:
Q  219 tggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 271  Q
    |||| ||||||||||| |||||||||| || ||||||||||||||| ||||||    
T  1548423 tggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaa 1548475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 1600647 - 1600575
Alignment:
Q  91 cccaatttgcaattgcttaatttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaagga 163  Q
    |||||||||||| ||||| |||||||   |||| ||   ||||||||||||||||||| ||||||||||||||    
T  1600647 cccaatttgcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaagga 1600575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 53761771 - 53761839
Alignment:
Q  219 tggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaac 287  Q
    |||||||||||||| ||||||||| ||||| | |||||||||||||| ||| || ||||| || |||||    
T  53761771 tggaatgaactttgtagttcccaagctagaggcgttgaacttgtcatttacgaaagttaacgataaaac 53761839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 1508021 - 1508064
Alignment:
Q  238 cccaaactagaagtgttgaacttgtcatatacaaatgttaatga 281  Q
    ||||||||||||||||||||||||||| |||| |||||| ||||    
T  1508021 cccaaactagaagtgttgaacttgtcacataccaatgttgatga 1508064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 8187091 - 8187142
Alignment:
Q  220 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 271  Q
    ||||||||||||||| || ||||||| || ||||||||||||||| ||||||    
T  8187091 ggaatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaa 8187142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 8183859 - 8183973
Alignment:
Q  49 tggttaagagataaaagcttcaaaatgattgcttcagttttccccaatttgcaattgcttaatttgagttattgcttttcaatatctgaagaaggtattt 148  Q
    ||||||| |||||||| | ||||||   ||||||| || ||||||||||||||   |||| |||||||| ||||||||   || |||||| ||||||||     
T  8183859 tggttaacagataaaaacgtcaaaaaatttgcttccgtgttccccaatttgcagcggcttgatttgagtcattgctttgacatttctgaaaaaggtatta 8183958  T
Q  149 ttcaagttttaagga 163  Q
     |||| |||||||||    
T  8183959 ctcaaattttaagga 8183973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 547179 - 547110
Alignment:
Q  53 taagagataaaagcttcaaaatgattgcttcagttttccccaatttgcaattgcttaatttgagttattg 122  Q
    |||||||| ||||| |||||||| || ||||  | ||||||||||||||| ||||| |||| ||||||||    
T  547179 taagagatgaaagcatcaaaatgtttccttccatgttccccaatttgcaactgcttgatttaagttattg 547110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 1524483 - 1524547
Alignment:
Q  217 catggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatga 281  Q
    ||||||||||||||||||||||||||  | || |||||||| ||||||  ||||| |||| ||||    
T  1524483 catggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatga 1524547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 7307957 - 7307909
Alignment:
Q  222 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 270  Q
    |||||||||| ||||||||||| | || || ||||||||||||||||||    
T  7307957 aatgaactttaaagttcccaaattggaggtattgaacttgtcatataca 7307909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 12116576 - 12116636
Alignment:
Q  221 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatga 281  Q
    ||||||||||||| ||||| ||  |||| ||||||||||||||| |||||| |||| ||||    
T  12116576 gaatgaactttgatgttccaaatttagaggtgttgaacttgtcacatacaagtgttgatga 12116636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 281
Target Start/End: Original strand, 18315063 - 18315334
Alignment:
Q  10 agccctcaattaaagtctctccatttgatttcgagtcaatggttaagagataaaagcttcaaaatgattgcttcagttttccccaatttgcaattgctta 109  Q
    |||||||||||||||||||||| ||| | ||  | |  ||||||||||||  ||||| |||||||  || ||||  |||||||||||||||| ||||||     
T  18315063 agccctcaattaaagtctctccgttttacttgcaattcatggttaagagaggaaagcatcaaaatattttcttccattttccccaatttgcagttgcttg 18315162  T
Q  110 atttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaaggacatgttccgagcttaagcatttgaacttaactggcttaagaggttg 209  Q
    ||||||| || |||  |   ||| ||||||||||||||| |||||||||| | |  ||||| ||| |||  || ||||||||| || |      | |       
T  18315163 atttgagctactgcgataacatacctgaagaaggtatttgtcaagttttacgaagttgttctgagattagacagttgaacttagctcgtgattcaagaat 18315262  T
Q  210 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatga 281  Q
    |||||| | ||||||||||||| ||||||||||||| || ||||||||||||||| ||||||| ||| ||||    
T  18315263 gaagctacgtggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatga 18315334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 27922605 - 27922546
Alignment:
Q  222 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatga 281  Q
    |||||||||||||||||||||| | || ||||||||||||||||||||||||||| ||||    
T  27922605 aatgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatga 27922546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 21235658 - 21235607
Alignment:
Q  219 tggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 270  Q
    |||| |||||||||||||||||||||| || |||||||||||||||||||||    
T  21235658 tggagtgaactttgaagttcccaaactggaggtgttgaacttgtcatataca 21235607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 271
Target Start/End: Complemental strand, 32151549 - 32151349
Alignment:
Q  68 tcaaaatgattgcttcagttttccccaatttgcaattgcttaatttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaaggacatg 167  Q
    |||||||| |||||||  ||||||| ||||||||| ||||| ||||||| | ||||  |   |||||||||||||| |||| ||||||||||||   |||    
T  32151549 tcaaaatgtttgcttccattttccctaatttgcaactgcttgatttgaggtgttgccataacatatctgaagaaggaatttgtcaagttttaag---atg 32151453  T
Q  168 ttccgagcttaagcatttgaacttaactggcttaagaggttggaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatat 267  Q
     || ||| ||| ||||||||| || || ||||    |  |  |||||||| |||||||||||| |||||| |||| || || ||||| |||||||||| |    
T  32151452 ctctgagattaggcatttgaatttcaccggctgtttacatgtgaagctgcgtggaatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgt 32151353  T
Q  268 acaa 271  Q
    ||||    
T  32151352 acaa 32151349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 17636402 - 17636445
Alignment:
Q  221 gaatgaactttgaagttcccaaactagaagtgttgaacttgtca 264  Q
    ||||||||||||||||||||||| | || |||||||||||||||    
T  17636402 gaatgaactttgaagttcccaaattggaggtgttgaacttgtca 17636445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 28246299 - 28246346
Alignment:
Q  224 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 271  Q
    |||||||||||||||||||||| || |||||| ||||||||| |||||    
T  28246299 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaa 28246346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 34936164 - 34936214
Alignment:
Q  221 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 271  Q
    |||||| |||||| ||||| |||||||| |||||| |||||||||||||||    
T  34936164 gaatgatctttgatgttccaaaactagaggtgttggacttgtcatatacaa 34936214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 44736666 - 44736626
Alignment:
Q  130 atatctgaagaaggtatttttcaagttttaaggacatgttc 170  Q
    |||| |||||||||||||| ||| |||||||||||||||||    
T  44736666 atatttgaagaaggtatttctcatgttttaaggacatgttc 44736626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 140 - 287
Target Start/End: Original strand, 15092071 - 15092218
Alignment:
Q  140 aaggtatttttcaagttttaaggacatgttccgagcttaagcatttgaacttaactggcttaagaggttggaagctgcatggaatgaactttgaagttcc 239  Q
    ||||||||| |||||||||||||| |||||   ||||||| ||||||||||||||||| |    | ||  ||| || |||||||||||||||| ||||||    
T  15092071 aaggtatttctcaagttttaaggaaatgttataagcttaaacatttgaacttaactggatgtttaagtgtgaaactacatggaatgaactttgcagttcc 15092170  T
Q  240 caaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaac 287  Q
    | | || || |||||||| |||||| | ||||| |||||||| |||||    
T  15092171 cgagctggaggtgttgaatttgtcagaaacaaaggttaatgataaaac 15092218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 10614702 - 10614625
Alignment:
Q  210 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaac 287  Q
    |||||| | |||||||||| |||  |||||||| || || ||||||||||||||| |||| || |||||||| |||||    
T  10614702 gaagctacttggaatgaacgttgttgttcccaatctggaggtgttgaacttgtcaaatacgaaggttaatgataaaac 10614625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 6416075 - 6415997
Alignment:
Q  210 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaact 288  Q
    |||||| ||||||||| |||||| ||||||||| || || ||||||||||||||| ||||||| |||||||| ||||||    
T  6416075 gaagctacatggaatggactttgtagttcccaacctggaggtgttgaacttgtcaaatacaaaggttaatgataaaact 6415997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 287
Target Start/End: Original strand, 6589313 - 6589390
Alignment:
Q  210 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaac 287  Q
    |||||| | |||||||||||||| ||||||||  || || ||||||||||||||| |||||||||||||||| |||||    
T  6589313 gaagctacttggaatgaactttgtagttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaac 6589390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 12102371 - 12102315
Alignment:
Q  214 ctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 270  Q
    ||||||||| |||||||||||||||||||||| || ||||||||||||||| |||||    
T  12102371 ctgcatggattgaactttgaagttcccaaactggaggtgttgaacttgtcacataca 12102315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 6403040 - 6402910
Alignment:
Q  139 gaaggtatttttcaagttttaaggacatgttccgagcttaagcatttgaacttaactggcttaagaggttggaagctgcatggaatgaactttgaagttc 238  Q
    |||||||||| |||||||||||||| |||||   |  ||| |||||||||||||||||| |    | |   |||||| | |||||| ||||||| |||||    
T  6403040 gaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttc 6402941  T
Q  239 ccaaactagaagtgttgaacttgtcatatac 269  Q
    || ||||||||||||||||||||||| ||||    
T  6402940 cccaactagaagtgttgaacttgtcagatac 6402910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 6432270 - 6432209
Alignment:
Q  210 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 271  Q
    |||||| |||||||||||||||||||||||||| ||  | ||||||||||||||| ||||||    
T  6432270 gaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaacttgtcaaatacaa 6432209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 6410115 - 6410054
Alignment:
Q  210 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 271  Q
    |||||| |||||||||||||||||||||||||| ||  | |||||||||| |||| ||||||    
T  6410115 gaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaa 6410054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 9411456 - 9411404
Alignment:
Q  218 atggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 270  Q
    ||||| |||||||||| |||||||| || || |||||||||||||||||||||    
T  9411456 atggattgaactttgaggttcccaagctggaggtgttgaacttgtcatataca 9411404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 7994182 - 7994249
Alignment:
Q  220 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaac 287  Q
    ||||||||||||| |||||| || ||||| ||||||||| ||||| ||||||  ||||||||| ||||    
T  7994182 ggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaatacaagggttaatgacgaaac 7994249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 9411622 - 9411555
Alignment:
Q  49 tggttaagagataaaagcttcaaaatgattgcttcagttttccccaatttgcaattgcttaatttgag 116  Q
    |||||||||||||||| | |||||| | |||||||  ||||||||||||||||  ||||| |||||||    
T  9411622 tggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgag 9411555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 11936279 - 11936326
Alignment:
Q  224 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 271  Q
    |||||||||||||||||||||| || |||||| ||||||||| |||||    
T  11936279 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaa 11936326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 11948259 - 11948306
Alignment:
Q  224 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 271  Q
    |||||||||||||||||||||| || |||||| ||||||||| |||||    
T  11948259 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaa 11948306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 6394966 - 6394912
Alignment:
Q  217 catggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 271  Q
    |||||||||||||||| ||||||| | || || ||||||||||||||| ||||||    
T  6394966 catggaatgaactttgcagttcccgagctggaggtgttgaacttgtcaaatacaa 6394912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 6423314 - 6423265
Alignment:
Q  222 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 271  Q
    |||||||||| |||||||||| || || ||||||||||||||| ||||||    
T  6423314 aatgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaa 6423265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 7119337 - 7119284
Alignment:
Q  139 gaaggtatttttcaagttttaaggacatgttccgagcttaagcatttgaactta 192  Q
    |||||||||| |||||||||||||| ||||||  || |||| ||||||||||||    
T  7119337 gaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaactta 7119284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 7131815 - 7131762
Alignment:
Q  139 gaaggtatttttcaagttttaaggacatgttccgagcttaagcatttgaactta 192  Q
    |||||||||| |||||||||||||| ||||||  || |||| ||||||||||||    
T  7131815 gaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaactta 7131762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 6594596 - 6594656
Alignment:
Q  210 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 270  Q
    |||||| |||||||| ||||||  |||||||||||| || |||||| |||||||| |||||    
T  6594596 gaagctacatggaataaactttttagttcccaaactggaggtgttgtacttgtcaaataca 6594656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 41901542 - 41901596
Alignment:
Q  227 actttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatga 281  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatga 41901596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 41889556 - 41889615
Alignment:
Q  222 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatga 281  Q
    |||||||||| ||||||||||| | || ||||||||||| ||||||||||| ||| ||||    
T  41889556 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgatga 41889615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Original strand, 20478112 - 20478149
Alignment:
Q  250 gtgttgaacttgtcatatacaaatgttaatgacaaaac 287  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  20478112 gtgttgaacttgtcatatacaaatgttgatgacgaaac 20478149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 41901404 - 41901481
Alignment:
Q  86 ttttccccaatttgcaattgcttaatttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaagga 163  Q
    ||||||||||||||||  ||||| |||||||  |||| | |   |||| ||||||||||||| |||||||||||||||    
T  41901404 ttttccccaatttgcagctgcttgatttgagcaattgttgtcgcatatttgaagaaggtattgttcaagttttaagga 41901481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 287
Target Start/End: Original strand, 13470722 - 13470799
Alignment:
Q  210 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaac 287  Q
    |||||| | ||||||||||||||  |||||||| || || ||||||||||||||| ||||||| |||||||| |||||    
T  13470722 gaagctacttggaatgaactttgttgttcccaatctggaggtgttgaacttgtcaaatacaaaggttaatgataaaac 13470799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 51120887 - 51120936
Alignment:
Q  214 ctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtc 263  Q
    ||||||||||||||||||||||||| |||| | || ||||||||||||||    
T  51120887 ctgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtc 51120936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 1657346 - 1657299
Alignment:
Q  224 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 271  Q
    |||||||||||||||||||||| || |||||| ||||||||| |||||    
T  1657346 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaa 1657299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 51113771 - 51113832
Alignment:
Q  210 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 271  Q
    |||||| | ||||||||||||||||| ||||||||| || |||||  |||||||| ||||||    
T  51113771 gaagctacttggaatgaactttgaagctcccaaactggaggtgttagacttgtcaaatacaa 51113832  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 9586729 - 9586677
Alignment:
Q  229 tttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatga 281  Q
    |||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||    
T  9586729 tttgaagtccccaagctagaggtgttgaacttgtcatatacagatgttaatga 9586677  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 9586910 - 9586854
Alignment:
Q  45 tcaatggttaagagataaaagcttcaaaatgattgcttcagttttccccaatttgca 101  Q
    |||||||||||||||||||| | ||| |||| |||||||| ||||||||||||||||    
T  9586910 tcaatggttaagagataaaaacatcataatgtttgcttcaattttccccaatttgca 9586854  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 9581377 - 9581286
Alignment:
Q  10 agccctcaattaaagtctctccatttgatttcgagtcaatggttaagagataaaagcttcaaaatgattgcttcagttttccccaatttgca 101  Q
    ||||||||||||||||||||  |||||  |   | |||||| ||||||||||||| | ||| |||| |||||||| ||||||||||||||||    
T  9581377 agccctcaattaaagtctcttgatttgggtcacaatcaatgtttaagagataaaaacatcataatgtttgcttcaattttccccaatttgca 9581286  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 32785773 - 32785823
Alignment:
Q  221 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 271  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||| ||||||    
T  32785773 gaatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaa 32785823  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 32785567 - 32785716
Alignment:
Q  12 ccctcaattaaagtctctccatttgatttcgagtcaatggttaagagataaaagcttcaaaatgattgcttcagttttccccaatttgcaattgcttaat 111  Q
    |||||||||||||| ||||||||||  |   | | | |||||||||||| ||||| |||  ||| || ||||  ||||  ||||||||||| | ||| ||    
T  32785567 ccctcaattaaagtttctccatttggctcgcaattattggttaagagatgaaagcatcaggatgttttcttctattttttccaatttgcaactacttgat 32785666  T
Q  112 ttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaag 161  Q
    ||||| ||||||| |   ||||||||||||||||||| |||| |||||||    
T  32785667 ttgagctattgctataacatatctgaagaaggtatttgtcaatttttaag 32785716  T

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Target: scaffold0807 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 1466 - 1525
Alignment:
Q  222 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatga 281  Q
    ||||||||||| |||||| || ||||| |||||| |||||||| ||||||||||| ||||    
T  1466 aatgaactttgtagttcctaagctagaggtgttggacttgtcaaatacaaatgttgatga 1525  T

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